RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CGGBP1Q9UFW8 167 aaPredicted RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 RAPGEFL1Q9UHV5 662 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 AKT3Q9Y243 479 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 EMC9Q9Y3B6 208 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 TRIOBPQ9H2D6 2365 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 GPRASP1Q5JY77 1395 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 DOT1LQ8TEK3 1739 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 CCDC163A0A0D9SF12 145 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 GNAT3A8MTJ3 354 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 GOLGA6L6A8MZA4 724 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 PRR33A8MZF0 331 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 CTIFO43310 598 aaKnown RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 F13BP05160 661 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 VEGFAP15692 232 aaPredicted RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 NFIAQ12857 509 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 TCEA2Q15560 299 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 SMIM5Q71RC9 77 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 SHISA5Q8N114 240 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 KRT222Q8N1A0 295 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 FIBCD1Q8N539 461 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 CDC6Q99741 560 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 DBNDD2Q9BQY9 259 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 METTL22Q9BUU2 404 aaPredicted RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 LGR4Q9BXB1 951 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 KRTAP9-2Q9BYQ4 174 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 NOL6Q9H6R4 1146 aaKnown RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 DIS3Q9Y2L1 958 aaKnown RBP6.42□□□□□ -1.38
CLK1-202ENST00000409403 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.42□□□□□ -1.38
CLK1-202ENST00000409403 CAPN6Q9Y6Q1 641 aa6.42□□□□□ -1.38
CLK1-202ENST00000409403 ABCC6O95255 1503 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 UBR3Q6ZT12 1888 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 SIGLEC6O43699 453 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 PROCP04070 461 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 TNNT3P45378 269 aaPredicted RBP6.41□□□□□ -1.38
CLK1-202ENST00000409403 TNK2Q07912 1038 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 NMIQ13287 307 aaPredicted RBP6.41□□□□□ -1.38
CLK1-202ENST00000409403 TMC3Q7Z5M5 1100 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 TRIM59Q8IWR1 403 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 MRGPRX3Q96LB0 322 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 DSCC1Q9BVC3 393 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 TSPY26PQ9H489 355 aa6.41□□□□□ -1.38
CLK1-202ENST00000409403 SF3B6Q9Y3B4 125 aaKnown RBP6.41□□□□□ -1.38
CLK1-202ENST00000409403 WDR33Q9C0J8 1336 aaKnown RBP6.41□□□□□ -1.38
CLK1-202ENST00000409403 RBAK-RBAKDNI3L0D1 243 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 GSC2O15499 205 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 TBX1O43435 398 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 ASMTLO95671 621 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 GRB10Q13322 594 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 HDAC1Q13547 482 aaPredicted RBP6.4□□□□□ -1.38
CLK1-202ENST00000409403 PPP2R5DQ14738 602 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 TKFCQ3LXA3 575 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 FOXB2Q5VYV0 432 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 SECISBP2LQ93073 1101 aaKnown RBP6.4□□□□□ -1.38
CLK1-202ENST00000409403 CHST7Q9NS84 486 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 LMBRD1Q9NUN5 540 aa6.4□□□□□ -1.38
CLK1-202ENST00000409403 MORC2Q9Y6X9 1032 aaPredicted RBP6.4□□□□□ -1.38
CLK1-202ENST00000409403 SLIT3O75094 1523 aa6.4□□□□□ -1.39
CLK1-202ENST00000409403 PASKQ96RG2 1323 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 KRTAP9-6A0A140TA67 174 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 FAM155AB1AL88 458 aaPredicted RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 KCNH1O95259 989 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 PRAMEF1O95521 474 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 CAPNS1P04632 268 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 CT47B1P0C2W7 299 aaPredicted RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 FGFR1P11362 822 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 L1CAMP32004 1257 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 GRIA2P42262 883 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 TMF1P82094 1093 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 RABEP1Q15276 862 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 TERF2Q15554 542 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 FAM209AQ5JX71 171 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 RNF187Q5TA31 235 aaPredicted RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 YOD1Q5VVQ6 348 aaPredicted RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 MCTP1Q6DN14 999 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 ENOX1Q8TC92 643 aaKnown RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 EXOC2Q96KP1 924 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 ZDHHC15Q96MV8 337 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 OSBPL1AQ9BXW6 950 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 ATG3Q9NT62 314 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 ANKRD36BQ8N2N9 1353 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 TRBV23-1A0A0A0MS06 115 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 SHISA3A0PJX4 238 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 WDR64B1ANS9 1081 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 BCAR3O75815 825 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 APPP05067 770 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 H2AFB1P0C5Y9 115 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 H2AFB2P0C5Z0 115 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 U2AF2P26368 475 aaKnown RBP eCLIP6.39□□□□□ -1.399e-7■■■□□ 14.9
CLK1-202ENST00000409403 CPSF6Q16630 551 aaKnown RBP eCLIP6.39□□□□□ -1.39
CLK1-202ENST00000409403 CLEC16AQ2KHT3 1053 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 CC2D1BQ5T0F9 858 aaKnown RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 XP32Q5T750 250 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 KRTAP1-3Q8IUG1 177 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 SCUBE1Q8IWY4 988 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 BTN2A2Q8WVV5 523 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 KISS1RQ969F8 398 aaPredicted RBP6.39□□□□□ -1.39
CLK1-202ENST00000409403 SNX27Q96L92 541 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 DHRS4Q9BTZ2 278 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 GPR62Q9BZJ7 368 aa6.39□□□□□ -1.39
CLK1-202ENST00000409403 STK26Q9P289 416 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms