RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PPM1KQ8N3J5 372 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 POLE3Q9NRF9 147 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 ABCF3Q9NUQ8 709 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 KCNJ14Q9UNX9 436 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 XDHP47989 1333 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 MEIS1O00470 390 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 JAK2O60674 1132 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 SEC24BO95487 1268 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TTLL1O95922 423 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 KCNA4P22459 653 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 CASP14P31944 242 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 CHRNA3P32297 505 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 IL6STP40189 918 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 SERPINB10P48595 397 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 KIF23Q02241 960 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 IFT88Q13099 833 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 DHX34Q14147 1143 aaKnown RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 NSMFQ6X4W1 530 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TADA2BQ86TJ2 420 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 PHKBQ93100 1093 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 ALKBH8Q96BT7 664 aaKnown RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 FAM89AQ96GI7 184 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 FAM193BQ96PV7 902 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 POLR3CQ9BUI4 534 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TRAIPQ9BWF2 469 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 EPB41L5Q9HCM4 733 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 SAP30BPQ9UHR5 308 aaKnown RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 ZHX2Q9Y6X8 837 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 MAP3K15Q6ZN16 1313 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 KRT8P05787 483 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 MAP3K7CLP57077 242 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 MECOMQ03112 1051 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 DHX9Q08211 1270 aaKnown RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 EHHADHQ08426 723 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 PDE1CQ14123 709 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 CERKLQ49MI3 558 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 SLFN13Q68D06 897 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 LRRC8BQ6P9F7 803 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 APOA5Q6Q788 366 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 LRIG3Q6UXM1 1119 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TEX2Q8IWB9 1127 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TRMT44Q8IYL2 757 aaKnown RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 SAAL1Q96ER3 474 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 CEP19Q96LK0 163 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 INO80BQ9C086 356 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-203ENST00000409050 USP44Q9H0E7 712 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 DPH5Q9H2P9 285 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 TBC1D7Q9P0N9 293 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 NFU1Q9UMS0 254 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 CLEC11AQ9Y240 323 aa6.57□□□□□ -1.36
SCN1A-203ENST00000409050 WDR64B1ANS9 1081 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SGK1O00141 431 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TBXAS1P24557 533 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 NDUFA8P51970 172 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 ICA1Q05084 483 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CTDSPL2Q05D32 466 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CASP8Q14790 479 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 G2E3Q7L622 706 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TEX9Q8N6V9 391 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 NSUN7Q8NE18 718 aaKnown RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MGARPQ8TDB4 240 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SPDL1Q96EA4 605 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TSC22D3Q99576 134 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 BLZF1Q9H2G9 400 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MAPK8IP1Q9UQF2 711 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PNMA6EA0A0J9YXQ4 647 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 EXOC1LA0A1B0GW35 172 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 USP17L12C9JPN9 530 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 USP17L21D6R901 530 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MAN1A2O60476 641 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PDE8BO95263 885 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 ABCB4P21439 1286 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 RNASE9P60153 205 aaKnown RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SNX1Q13596 522 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SKAP1Q86WV1 359 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 LARGE2Q8N3Y3 721 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 POMGNT1Q8WZA1 660 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 FRMD8Q9BZ67 464 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 HACD3Q9P035 362 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SLC13A4Q9UKG4 626 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 APOBEC2Q9Y235 224 aaKnown RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SNX5Q9Y5X3 404 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SAMD9LQ8IVG5 1584 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MFAP3LO75121 409 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 BBOX1O75936 387 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 KRT1P04264 644 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CCND2P30279 289 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TECP42680 631 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 HSPA2P54652 639 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 AP2B1P63010 937 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 LRMPQ12912 555 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 UNC13DQ70J99 1090 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MCPH1Q8NEM0 835 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CMTM5Q96DZ9 223 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 BRIP1Q9BX63 1249 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PARVGQ9HBI0 331 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CPSF3Q9UKF6 684 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms