RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 PCDHGC5Q9Y5F6 944 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LAMA4Q16363 1823 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 FRYLO94915 3013 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PLXNA3P51805 1871 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 STXBP3O00186 592 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 KDM4AO75164 1064 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 EYA4O95677 639 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 GLP2RO95838 553 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PDE1AP54750 535 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MRPS9P82933 396 aaKnown RBP13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MGAT3Q09327 533 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 TRIM67Q6ZTA4 783 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 UPF3BQ9BZI7 483 aaKnown RBP13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 EHMT1Q9H9B1 1298 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CD207Q9UJ71 328 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 FAM50BQ9Y247 325 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CCDC171Q6TFL3 1326 aa13.86□□□□□ -0.19
SPTLC1P3-201ENST00000403408 EP300Q09472 2414 aaPredicted RBP13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 B4E1Z4 1266 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LOC730098B7Z3J9 87 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ENPP3O14638 875 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 RB1P06400 928 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 GHRP10912 638 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 VCPP55072 806 aaKnown RBP13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ZXDAP98168 799 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 RBM10P98175 930 aaKnown RBP13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LPIN1Q14693 890 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ASPRV1Q53RT3 343 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 RTN4RL1Q86UN2 441 aaPredicted RBP13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CRIPAKQ8N1N5 446 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LMBR1Q8WVP7 490 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ESR2Q92731 530 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 GPR20Q99678 358 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LMAN2LQ9H0V9 348 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PLAGL2Q9UPG8 496 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MYO10Q9HD67 2058 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ADGRA3Q8IWK6 1321 aa13.85□□□□□ -0.19
SPTLC1P3-201ENST00000403408 NCK2O43639 380 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CAND2O75155 1236 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MMP1P03956 469 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ITGB1P05556 798 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 RRP1P56182 461 aaKnown RBP13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CBX2Q14781 532 aaPredicted RBP13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 SPPL3Q8TCT6 385 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PBXIP1Q96AQ6 731 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ZBTB10Q96DT7 871 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ASIC4Q96FT7 647 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ZSCAN10Q96SZ4 725 aaPredicted RBP13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 C11orf84Q9BUA3 381 aaPredicted RBP13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 KAT14Q9H8E8 782 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MLXIPQ9HAP2 919 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ZSWIM5Q9P217 1185 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MRPL42Q9Y6G3 142 aaKnown RBP13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PLXNA4Q9HCM2 1894 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LOXHD1Q8IVV2 1947 aa13.84□□□□□ -0.19
SPTLC1P3-201ENST00000403408 DGKIO75912 1065 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PARP1P09874 1014 aaKnown RBP13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 TGFB3P10600 412 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PCP11498 1178 aaKnown RBP13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PTPN5P54829 565 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 KCNV1Q6PIU1 500 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CYFIP1Q7L576 1253 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SMRP1Q8NCR6 262 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 VN1R2Q8NFZ6 395 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 APBB2Q92870 758 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 POP1Q99575 1024 aaKnown RBP13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 AMNQ9BXJ7 453 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 AGO3Q9H9G7 860 aaKnown RBP13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 MAD2L2Q9UI95 211 aa13.83□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SPATA31C2B4DYI2 1134 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 DHX16O60231 1041 aaKnown RBP13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ST18O60284 1047 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ICAM3P32942 547 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 GATMP50440 423 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ARHGAP4P98171 946 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ANKRD45Q5TZF3 282 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 FCHSD1Q86WN1 690 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 INPP4AQ96PE3 977 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 RNF41Q9H4P4 317 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SENP2Q9HC62 589 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 BARX2Q9UMQ3 279 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PCDHA1Q9Y5I3 950 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 FRMPD4Q14CM0 1322 aa13.82□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PALM3A6NDB9 673 aaPredicted RBP13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ZBTB5O15062 677 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CYTH3O43739 400 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PDGFBP01127 241 aaPredicted RBP13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CCND2P30279 289 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 COASYQ13057 564 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 BTG3Q14201 252 aaPredicted RBP13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SEC23AQ15436 765 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 FBXO47Q5MNV8 452 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 MARCH8Q5T0T0 291 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 UTP14CQ5TAP6 766 aaKnown RBP13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 METTL7BQ6UX53 244 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 FBXL6Q8N531 539 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 EFHBQ8N7U6 833 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 KLHL23Q8NBE8 558 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 USP26Q9BXU7 913 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 IL25Q9H293 177 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms