RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CACNB1Q02641 598 aaPredicted RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 STXBP2Q15833 593 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 MAPK6Q16659 721 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 CDO1Q16878 200 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 BBS9Q3SYG4 887 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 LRRC24Q50LG9 513 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 MEI1Q5TIA1 1274 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 TMTC3Q6ZXV5 915 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 CENPKQ9BS16 269 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 XPO4Q9C0E2 1151 aaKnown RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 GRIN2AQ12879 1464 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 MEIS1O00470 390 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 BRD1O95696 1058 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 MT-ND3P03897 115 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 NKX1-1Q15270 411 aaPredicted RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 KRBA2Q6ZNG9 492 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 WDR48Q8TAF3 677 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 STAG1Q8WVM7 1258 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 IFT43Q96FT9 208 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 MASTLQ96GX5 879 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 CUEDC2Q9H467 287 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 PARVGQ9HBI0 331 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 KIAA1468Q9P260 1216 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 FAF1Q9UNN5 650 aaPredicted RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 SNX2O60749 519 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 AFPP02771 609 aaKnown RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 PAMP19021 973 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 CA4P22748 312 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 PHKA2P46019 1235 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 WHAMMP3Q1A5X7 153 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 ANKRD20A4Q4UJ75 823 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 ANKRD20A8PQ5CZ79 823 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 HABP4Q5JVS0 413 aaKnown RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 ANKRD20A2Q5SQ80 823 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 ANKRD20A1Q5TYW2 823 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 ATG16L1Q676U5 607 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 SCYL3Q8IZE3 742 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 CDV3Q9UKY7 258 aaKnown RBP7.75□□□□□ -1.17
UPF2-203ENST00000397053 ZNF518AQ6AHZ1 1483 aa7.75□□□□□ -1.17
UPF2-203ENST00000397053 LAD1O00515 517 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 MOCS3O95396 460 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 MYL1P05976 194 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 EEF1B2P24534 225 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 IL13P35225 146 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 NSUN2Q08J23 767 aaKnown RBP eCLIP7.74□□□□□ -1.17
UPF2-203ENST00000397053 DRP2Q13474 957 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 LBRQ14739 615 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 TAF1BQ53T94 588 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 CCDC157Q569K6 752 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 RRM2BQ7LG56 351 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ERICH1Q86X53 443 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TBCKQ8TEA7 893 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TM6SF1Q9BZW5 370 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SLC4A7Q9Y6M7 1214 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ZMYM6O95789 1325 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TOM1L1O75674 476 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ASMTLO95671 621 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SYF2O95926 243 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 ST8SIA6P61647 398 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 CAPRIN1Q14444 709 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 TRMT10CQ7L0Y3 403 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 PDIK1LQ8N165 341 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 RAB42Q8N4Z0 105 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ZNF713Q8N859 430 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 RASGRP4Q8TDF6 673 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 PBXIP1Q96AQ6 731 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 PIGSQ96S52 555 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 FSD1LQ9BXM9 530 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 MAGEB5Q9BZ81 275 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SPON1Q9HCB6 807 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 OGFRQ9NZT2 677 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 KLHL8Q9P2G9 620 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 PPP1R9AQ9ULJ8 1098 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TIAM1Q13009 1591 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 COBLO75128 1261 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 LDHAP00338 332 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 IFNAR2P48551 515 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ESRRGP62508 458 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TTLL4Q14679 1199 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SRRM1Q8IYB3 904 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 ENOX1Q8TC92 643 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 SCG3Q8WXD2 468 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 NCLNQ969V3 563 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 EAF2Q96CJ1 260 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 OTUD5Q96G74 571 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 CNOT6LQ96LI5 555 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 TUBGCP2Q9BSJ2 902 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TRIM54Q9BYV2 358 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 COA1Q9GZY4 146 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SARS2Q9NP81 518 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 TRIM35Q9UPQ4 493 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 DAAM1Q9Y4D1 1078 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 GTPBP10A4D1E9 387 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 CLDN3O15551 220 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ANP32DO95626 131 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 CYBBP04839 570 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TAC1P20366 129 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 TRAPPC10P48553 1259 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ART3Q13508 389 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 LRRC41Q15345 812 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms