RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 A0A1W2PQ27 194 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 A0A1W2PQ64 194 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 A0A1W2PQD8 194 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 IPO5O00410 1097 aaKnown RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 NEMFO60524 1076 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 OR52Z1P0C646 297 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 GRM1Q13255 1194 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 TRIM71Q2Q1W2 868 aaKnown RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 TLK2Q86UE8 772 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 PCSK9Q8NBP7 692 aaKnown RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 UNC45AQ9H3U1 944 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 SLC9A2Q9UBY0 812 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 PTPRSQ13332 1948 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 SPATA31C1P0DKV0 1188 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 ATP4AP20648 1035 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 ANO1Q5XXA6 986 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 JPH1Q9HDC5 661 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-202ENST00000394943 POU5F1BQ06416 359 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 PKP1Q13835 747 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 TMEM63BQ5T3F8 832 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 ARRDC4Q8NCT1 418 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 TEKT3Q9BXF9 490 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 KDM3AQ9Y4C1 1321 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 TXNP10599 105 aaKnown RBP7.93□□□□□ -1.14
LIMA1-202ENST00000394943 RARBP10826 455 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 RPA1P27694 616 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 IFNLR1Q8IU57 520 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-202ENST00000394943 SEPT1Q8WYJ6 367 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 ZNF396Q96N95 335 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-202ENST00000394943 ANKEF1Q9NU02 776 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 CHMP5Q9NZZ3 219 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 SQORQ9Y6N5 450 aa7.93□□□□□ -1.14
LIMA1-202ENST00000394943 PDCD11Q14690 1871 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 SCP2P22307 547 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 MTFR1Q15390 333 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 LY6KQ17RY6 165 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 TRAF7Q6Q0C0 670 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 NOL8Q76FK4 1167 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 SH3TC2Q8TF17 1288 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ZNF577Q9BSK1 485 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 KATNAL1Q9BW62 490 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ZMYM2Q9UBW7 1377 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 MYADML2A6NDP7 307 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 WDR64B1ANS9 1081 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ZEB2O60315 1214 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ACTR2P61160 394 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 E2F4Q16254 413 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 FSCN1Q16658 493 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 DGKDQ16760 1214 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 COL13A1Q5TAT6 717 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 FCHSD1Q86WN1 690 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 CCAR1Q8IX12 1150 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 U2AF1L4Q8WU68 220 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ABHD8Q96I13 439 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 PGBD1Q96JS3 809 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 SDF4Q9BRK5 362 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 MTG1Q9BT17 334 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 TIPINQ9BVW5 301 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 KCND2Q9NZV8 630 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 NAP1L2Q9ULW6 460 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 CCNT1O60563 726 aaKnown RBP7.92□□□□□ -1.14
LIMA1-202ENST00000394943 CUTAO60888 179 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 RTP1P59025 263 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 CALCRLQ16602 461 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 RESP18Q5W5W9 173 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 KCNG4Q8TDN1 519 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 USP28Q96RU2 1077 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 NFKBIZQ9BYH8 718 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 MAGEF1Q9HAY2 307 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 XPNPEP3Q9NQH7 507 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 PCDHA10Q9Y5I2 948 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 ATP6V1DQ9Y5K8 247 aa7.92□□□□□ -1.14
LIMA1-202ENST00000394943 FRMD3A2A2Y4 597 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 DKC1O60832 514 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 SLITRK3O94933 977 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 GGPS1O95749 300 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 LGALS2P05162 132 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 ACLYP53396 1101 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 MGAT3Q09327 533 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 HSDL1Q3SXM5 330 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PRAMEF19Q5SWL8 479 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 MARCH8Q5T0T0 291 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 OR6J1Q8NGC5 347 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 SMARCAD1Q9H4L7 1026 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 USP25Q9UHP3 1055 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 CFAP45Q9UL16 551 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 CLIC4Q9Y696 253 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 EML1O00423 815 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 GAS2O43903 313 aaKnown RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 BAG4O95429 457 aaKnown RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 P4HBP07237 508 aaKnown RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PSAPP07602 524 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 ANP32AP39687 249 aaKnown RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PTGDRQ13258 359 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 ZNF484Q5JVG2 852 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 MIS18BP1Q6P0N0 1132 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 SH3RF1Q7Z6J0 888 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 RNF180Q86T96 592 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 BBXQ8WY36 941 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 FAM167AQ96KS9 214 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms