RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 TDP2O95551 362 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 CCNE2O96020 404 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 CYP3A4P08684 503 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 PTGISQ16647 500 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 PRR16Q569H4 304 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 EARS2Q5JPH6 523 aaKnown RBP8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 MFSD5Q6N075 450 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 C16orf59Q7L2K0 433 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 BICD2Q8TD16 824 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 TBCKQ8TEA7 893 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 DHX38Q92620 1227 aaKnown RBP8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 LENG9Q96B70 501 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 CDHR1Q96JP9 859 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 PHF20Q9BVI0 1012 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 KATNAL1Q9BW62 490 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 TUT1Q9H6E5 874 aaKnown RBP8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 JPH1Q9HDC5 661 aaPredicted RBP8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 SLC9A2Q9UBY0 812 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 GTF2IRD1Q9UHL9 959 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 LIMCH1Q9UPQ0 1083 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 NOD1Q9Y239 953 aa8.73□□□□□ -1.01
HMGB3P1-201ENST00000393368 SCN10AQ9Y5Y9 1956 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 SMIM10L2AP0DMW4 78 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 SMIM10L2BP0DMW5 78 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 ACTR2P61160 394 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 GUCY1B3Q02153 619 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 PTPN11Q06124 597 aaPredicted RBP8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 NR5A1Q13285 461 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 INF2Q27J81 1249 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 SESTD1Q86VW0 696 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 DAGLBQ8NCG7 672 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 GIMAP8Q8ND71 665 aaPredicted RBP8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 VWCEQ96DN2 955 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 ZBTB10Q96DT7 871 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 TBC1D32Q96NH3 1257 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 PCYT2Q99447 389 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 SDF4Q9BRK5 362 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 ZNF577Q9BSK1 485 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 RNPEPQ9H4A4 650 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 UPF2Q9HAU5 1272 aaKnown RBP8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 SETD4Q9NVD3 440 aa8.72□□□□□ -1.01
HMGB3P1-201ENST00000393368 IPO5O00410 1097 aaKnown RBP8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 MSH4O15457 936 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 MAFGO15525 162 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 DHX15O43143 795 aaKnown RBP8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 TREHO43280 583 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 CHMP2AO43633 222 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 SUPT20HL2P0C7V6 817 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 CIITAP33076 1130 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 IGBP1P78318 339 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 RABEP1Q15276 862 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 FAM109BQ6ICB4 259 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 PIK3AP1Q6ZUJ8 805 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 NIPA1Q7RTP0 329 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 DEFB128Q7Z7B8 93 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 TEX2Q8IWB9 1127 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 TMEM199Q8N511 208 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 LMBR1Q8WVP7 490 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 SEPT1Q8WYJ6 367 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 GLG1Q92896 1179 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 RNPC3Q96LT9 517 aaKnown RBP8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 SEZ6LQ9BYH1 1024 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 NFASCO94856 1347 aa8.71□□□□□ -1.02
HMGB3P1-201ENST00000393368 CCDC194A0A1B0GVG4 234 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 A0A1W2PPC1 479 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 C17orf102A2RUQ5 167 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 WNT7AO00755 349 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 SLC37A4O43826 429 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 CTSHP09668 335 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 IQCF3P0C7M6 154 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 XBP1P17861 261 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 KRT2P35908 639 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 SETQ01105 290 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 PPIGQ13427 754 aaKnown RBP eCLIP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 NONOQ15233 471 aaKnown RBP eCLIP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TRIM71Q2Q1W2 868 aaKnown RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 LETM2Q2VYF4 491 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TMEM240Q5SV17 173 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 KRT40Q6A162 431 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 MCTP2Q6DN12 878 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 GALNT17Q6IS24 598 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 RUFY4Q6ZNE9 571 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 ZNF365Q70YC5 407 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 Q7L0L9 218 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 OTOP2Q7RTS6 562 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TRMT1LQ7Z2T5 733 aaKnown RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 KRT25Q7Z3Z0 450 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 CCDC60Q8IWA6 550 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TRAPPC12Q8WVT3 735 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 WASF1Q92558 559 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TNFRSF25Q93038 417 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 ATP6V0A1Q93050 837 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 BACH2Q9BYV9 841 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 OSBPL7Q9BZF2 842 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 IL23AQ9NPF7 189 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 CXXC1Q9P0U4 656 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 ZNF215Q9UL58 517 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 TRIOBPQ9H2D6 2365 aa8.7□□□□□ -1.02
HMGB3P1-201ENST00000393368 GRXCR1A8MXD5 290 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms