RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 DCP1AQ9NPI6 582 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 BIN2Q9UBW5 565 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 TMEM59LQ9UK28 342 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 DUOX1Q9NRD9 1551 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 C1orf167Q5SNV9 1468 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 C5orf60A6NFR6 353 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 POTEMA6NI47 508 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 RBAK-RBAKDNI3L0D1 243 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 HGSO14964 777 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 ACTN1P12814 892 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 CHN1P15882 459 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 EPS15P42566 896 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 CCNHP51946 323 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 PRPF4BQ13523 1007 aaKnown RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 LACTB2Q53H82 288 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 FMNL3Q8IVF7 1028 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 CCDC113Q9H0I3 377 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 BLOC1S4Q9NUP1 217 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 PPIP5K2O43314 1243 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 SHBGP04278 402 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 MMEP08473 750 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 USP17L8P0C7I0 530 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 GRB10Q13322 594 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 ASIC2Q16515 512 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 UNC13DQ70J99 1090 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 TMC3Q7Z5M5 1100 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 SCFD2Q8WU76 684 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 LARP4BQ92615 738 aaKnown RBP17.35■□□□□ 0.37
CKAP4-201ENST00000378026 MAGEF1Q9HAY2 307 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 MCM9Q9NXL9 1143 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.35■□□□□ 0.379e-12■■□□□ 14.1
CKAP4-201ENST00000378026 STXBP3O00186 592 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 PGRMC1O00264 195 aaKnown RBP17.35■□□□□ 0.37
CKAP4-201ENST00000378026 VIMP08670 466 aaKnown RBP17.35■□□□□ 0.37
CKAP4-201ENST00000378026 GCKP35557 465 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 AGBL2Q5U5Z8 902 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 DDX12PQ92771 950 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 AK8Q96MA6 479 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 NUDT12Q9BQG2 462 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 MTFR1LQ9H019 292 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 KDM4CQ9H3R0 1056 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 CD2APQ9Y5K6 639 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 COL4A3BPQ9Y5P4 624 aa17.35■□□□□ 0.37
CKAP4-201ENST00000378026 DNAJC8O75937 253 aaPredicted RBP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 ANP32DO95626 131 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 GUF1Q8N442 669 aaKnown RBP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 SPDL1Q96EA4 605 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 F8VZ95 297 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 PPP1R12AO14974 1030 aaPredicted RBP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 ATF3P18847 181 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 PRPHP41219 470 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 PTK2Q05397 1052 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 MTMR3Q13615 1198 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 NONOQ15233 471 aaKnown RBP eCLIP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 LRRC34Q8IZ02 419 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 ANKS4BQ8N8V4 417 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 TBCKQ8TEA7 893 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 GJA10Q969M2 543 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 IL17RBQ9NRM6 502 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 TMEM260Q9NX78 707 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.34■□□□□ 0.37
CKAP4-201ENST00000378026 SMCO2A6NFE2 343 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 LAD1O00515 517 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 PEX26Q7Z412 305 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 KCNK18Q7Z418 384 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 DAAM2Q86T65 1068 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 C3orf20Q8ND61 904 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 SLC4A9Q96Q91 983 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 CARD10Q9BWT7 1032 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 FGFBP2Q9BYJ0 223 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 SH3GLB2Q9NR46 395 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 PANK4Q9NVE7 773 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 SWAP70Q9UH65 585 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 MAD2L2Q9UI95 211 aa17.34■□□□□ 0.37
CKAP4-201ENST00000378026 TRPM3Q9HCF6 1732 aaPredicted RBP17.33■□□□□ 0.37
CKAP4-201ENST00000378026 RTN2O75298 545 aa17.33■□□□□ 0.37
CKAP4-201ENST00000378026 USP11P51784 963 aa17.33■□□□□ 0.37
CKAP4-201ENST00000378026 LRRC63Q05C16 580 aa17.33■□□□□ 0.37
CKAP4-201ENST00000378026 MAGEC3Q8TD91 643 aa17.33■□□□□ 0.37
CKAP4-201ENST00000378026 BARHL2Q9NY43 387 aa17.33■□□□□ 0.37
CKAP4-201ENST00000378026 BCORQ6W2J9 1755 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 FGRP09769 529 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 SLCO1A2P46721 670 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 ERMARDQ5T6L9 678 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 NEK8Q86SG6 692 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 PRCCQ92733 491 aaPredicted RBP17.33■□□□□ 0.36
CKAP4-201ENST00000378026 PNMA5Q96PV4 448 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.33■□□□□ 0.36
CKAP4-201ENST00000378026 ZHX3Q9H4I2 956 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 NR2E1Q9Y466 385 aa17.33■□□□□ 0.36
CKAP4-201ENST00000378026 MYH7BA7E2Y1 1941 aa17.32■□□□□ 0.36
CKAP4-201ENST00000378026 CLSTN1O94985 981 aa17.32■□□□□ 0.36
CKAP4-201ENST00000378026 NKX1-1Q15270 411 aaPredicted RBP17.32■□□□□ 0.36
CKAP4-201ENST00000378026 ARMC9Q7Z3E5 817 aa17.32■□□□□ 0.36
CKAP4-201ENST00000378026 MYOCDQ8IZQ8 938 aa17.32■□□□□ 0.36
CKAP4-201ENST00000378026 SPAG5Q96R06 1193 aa17.32■□□□□ 0.36
CKAP4-201ENST00000378026 PRMT1Q99873 361 aaKnown RBP17.32■□□□□ 0.36
CKAP4-201ENST00000378026 UTP11Q9Y3A2 253 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms