RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CHRDL2Q6WN34 429 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 NEK8Q86SG6 692 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 FBXO18Q8NFZ0 1043 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 MBOAT7Q96N66 472 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 PCYT2Q99447 389 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 KATNAL1Q9BW62 490 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 TUT1Q9H6E5 874 aaKnown RBP15.16■□□□□ 0.02
VPS28-202ENST00000377348 HDAC6Q9UBN7 1215 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 TBX21Q9UL17 535 aa15.16■□□□□ 0.02
VPS28-202ENST00000377348 KIF28PB7ZC32 967 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 WNT7AO00755 349 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 KIAA0355O15063 1070 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 CYP2C9P11712 490 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 CUL4AQ13619 759 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 SAFBQ15424 915 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS28-202ENST00000377348 GDF6Q6KF10 455 aaPredicted RBP15.15■□□□□ 0.02
VPS28-202ENST00000377348 C7orf31Q8N865 590 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 SEZ6LQ9BYH1 1024 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 PPP1R12CQ9BZL4 782 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 DDX25Q9UHL0 483 aaKnown RBP15.15■□□□□ 0.02
VPS28-202ENST00000377348 SMC3Q9UQE7 1217 aa15.15■□□□□ 0.02
VPS28-202ENST00000377348 CCNT1O60563 726 aaKnown RBP15.14■□□□□ 0.01
VPS28-202ENST00000377348 RAG1P15918 1043 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 MARK3P27448 753 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 ZNF200P98182 395 aaPredicted RBP15.14■□□□□ 0.01
VPS28-202ENST00000377348 HIC1Q14526 733 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 MOXD1Q6UVY6 613 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 SLC5A5Q92911 643 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 BADQ92934 168 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 GDF15Q99988 308 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 TBC1D22BQ9NU19 505 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 GTF2IRD1Q9UHL9 959 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 UMODL1Q5DID0 1318 aa15.14■□□□□ 0.01
VPS28-202ENST00000377348 CHMP2AO43633 222 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 LGR5O75473 907 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 ATG7O95352 703 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 SMIM10L2AP0DMW4 78 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 SMIM10L2BP0DMW5 78 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 PTPN11Q06124 597 aaPredicted RBP15.13■□□□□ 0.01
VPS28-202ENST00000377348 PTGISQ16647 500 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 LRCH2Q5VUJ6 765 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 PPP4R3AQ6IN85 833 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 ABHD15Q6UXT9 468 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 SESTD1Q86VW0 696 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 ETNPPLQ8TBG4 499 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 GLG1Q92896 1179 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 CTAGE1Q96RT6 745 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 RNPEPQ9H4A4 650 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 FOXD4L1Q9NU39 408 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 ZNF215Q9UL58 517 aaPredicted RBP15.13■□□□□ 0.01
VPS28-202ENST00000377348 COLQQ9Y215 455 aaPredicted RBP15.13■□□□□ 0.01
VPS28-202ENST00000377348 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.13■□□□□ 0.01
VPS28-202ENST00000377348 LAMA3Q16787 3333 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 EMSYQ7Z589 1322 aa15.13■□□□□ 0.01
VPS28-202ENST00000377348 K7ELQ4 463 aaPredicted RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 GAS7O60861 476 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 PSMD10O75832 226 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 TIMP1P01033 207 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 SUPT20HL2P0C7V6 817 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 GCFC2P16383 781 aaKnown RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 ATP2B1P20020 1258 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 CYP2C18P33260 490 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 GNL2Q13823 731 aaKnown RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 POTEDQ86YR6 584 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 CCDC60Q8IWA6 550 aaPredicted RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 RIT2Q99578 217 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 LBHD1Q9BQE6 289 aaPredicted RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 TEKT3Q9BXF9 490 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 FOXP1Q9H334 677 aaPredicted RBP15.12■□□□□ 0.01
VPS28-202ENST00000377348 UNC45AQ9H3U1 944 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 HIPK3Q9H422 1215 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 SMARCAD1Q9H4L7 1026 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 NOD1Q9Y239 953 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 KIF3AQ9Y496 699 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 LTBP2Q14767 1821 aa15.12■□□□□ 0.01
VPS28-202ENST00000377348 IGKV6D-21A0A0A0MT36 114 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 C17orf102A2RUQ5 167 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 RBAK-RBAKDNI3L0D1 243 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 BACH1O14867 736 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 STAT5BP51692 787 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 KRT76Q01546 638 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 ZNF746Q6NUN9 644 aaPredicted RBP15.11■□□□□ 0.01
VPS28-202ENST00000377348 SWSAP1Q6NVH7 229 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 MIS18BP1Q6P0N0 1132 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 NOSTRINQ8IVI9 506 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 HAS1Q92839 578 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 NOC4LQ9BVI4 516 aaKnown RBP15.11■□□□□ 0.01
VPS28-202ENST00000377348 PRO3102Q9H379 93 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 AZI2Q9H6S1 392 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 KCNMB3Q9NPA1 279 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 SETD4Q9NVD3 440 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 ERAP1Q9NZ08 941 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 TCEAL9Q9UHQ7 104 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 SAMM50Q9Y512 469 aa15.11■□□□□ 0.01
VPS28-202ENST00000377348 TRIOBPQ9H2D6 2365 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 TREHO43280 583 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 HOXC8P31273 242 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 CCL23P55773 120 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 PLCB4Q15147 1175 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 LARP1BQ659C4 914 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms