RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 IGDCC4Q8TDY8 1250 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 TMEM209Q96SK2 561 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 CDC6Q99741 560 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SSBP3Q9BWW4 388 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 KRTAP3-1Q9BYR8 98 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 TMEM168Q9H0V1 697 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SMPD4Q9NXE4 827 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 ZFP69BQ9UJL9 534 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 B4GALT4O60513 344 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 MAFKO60675 156 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SRGAP2CP0DJJ0 459 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 FAHP16930 419 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 PFKPQ01813 784 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF827Q17R98 1081 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 HABP4Q5JVS0 413 aaKnown RBP3.5□□□□□ -1.85
VPS13A-206ENST00000376646 CD276Q5ZPR3 534 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 BORAQ6PGQ7 559 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 GPR155Q7Z3F1 870 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 FAM124AQ86V42 546 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 KBTBD2Q8IY47 623 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 DTX3Q8N9I9 347 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 SLC39A2Q9NP94 309 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 PPP4R1LQ9P1A2 415 aa3.5□□□□□ -1.85
VPS13A-206ENST00000376646 FAM47E-STBD1D6RA91 191 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PYGMP11217 842 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 KRT15P19012 456 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 ATP2B1P20020 1258 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 MAGEA10P43363 369 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 SPIRE1Q08AE8 756 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 KCTD1Q719H9 257 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 MTDHQ86UE4 582 aaKnown RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 TRIM48Q8IWZ4 208 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 TACO1Q9BSH4 297 aaKnown RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 ALG1Q9BT22 464 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 FTSJ1Q9UET6 329 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 CBLCQ9ULV8 474 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PTPN22Q9Y2R2 807 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PCDHA9Q9Y5H5 950 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 TRBV23-1A0A0A0MS06 115 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 FAM90A27PA6NNH2 459 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 KLHL18O94889 574 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 IL18BPO95998 194 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 ADAM17P78536 824 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 RBM10P98175 930 aaKnown RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 RASGRF1Q13972 1273 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 CYP4F22Q6NT55 531 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 OSTM1Q86WC4 334 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PTRH1Q86Y79 214 aaKnown RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 ZBTB38Q8NAP3 1195 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-206ENST00000376646 TTLL11Q8NHH1 800 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 PCDH19Q8TAB3 1148 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 ZFYVE21Q9BQ24 234 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 DLL4Q9NR61 685 aa3.49□□□□□ -1.85
VPS13A-206ENST00000376646 KDM2BQ8NHM5 1336 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 GPR42O15529 346 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 LAMTOR5O43504 91 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 AMY2AP04746 511 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 PDE6AP16499 860 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 AMY2BP19961 511 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 GUCY1A3Q02108 690 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 NFATC3Q12968 1075 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 RASA3Q14644 834 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 ICAM4Q14773 271 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 FSTL4Q6MZW2 842 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 ARHGAP36Q6ZRI8 547 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 GPR20Q99678 358 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 CATSPERZQ9NTU4 200 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 ARHGAP20Q9P2F6 1191 aa3.48□□□□□ -1.85
VPS13A-206ENST00000376646 C9orf118A6NHY6 69 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 MAN2B1O00754 1011 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 FBXO21O94952 628 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 CRTAMO95727 393 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 KNG1P01042 644 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 JAM2P57087 298 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 PAK1Q13153 545 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 ZXDCQ2QGD7 858 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 GLB1LQ6UWU2 654 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 SCUBE1Q8IWY4 988 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 JADE2Q9NQC1 790 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 RIC8BQ9NVN3 520 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 HSPBP1Q9NZL4 362 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF839A8K0R7 811 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF888P0CJ79 500 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF20P17024 532 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 PTPN1P18031 435 aaKnown RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 DNM2P50570 870 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 EPHA5P54756 1037 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 SERINC3Q13530 473 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 SEC23AQ15436 765 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 SMAD2Q15796 467 aaKnown RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 BTBD8Q5XKL5 378 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 PKN3Q6P5Z2 889 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 CISD2Q8N5K1 135 aaKnown RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 PTPRN2Q92932 1015 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 GNRHR2Q96P88 292 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 DEPDC7Q96QD5 511 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 CCDC113Q9H0I3 377 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 KCND1Q9NSA2 647 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms