RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CDC23Q9UJX2 597 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 ZNF518AQ6AHZ1 1483 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 RNF168Q8IYW5 571 aaPredicted RBP14.8□□□□□ -0.04
COL4A1-201ENST00000375820 TRIML1Q8N9V2 468 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 YEATS2Q9ULM3 1422 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 EXOC1LA0A1B0GW35 172 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 EIF2AK2P19525 551 aaKnown RBP14.8□□□□□ -0.04
COL4A1-201ENST00000375820 ATP6V0A1Q93050 837 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 SUGT1Q9Y2Z0 365 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 ERVV-2B6SEH9 535 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 OCRLQ01968 901 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 NNTQ13423 1086 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 PDCD2Q16342 344 aaPredicted RBP14.8□□□□□ -0.04
COL4A1-201ENST00000375820 FBXL13Q8NEE6 735 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 NUDCD1Q96RS6 583 aa14.8□□□□□ -0.04
COL4A1-201ENST00000375820 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.79□□□□□ -0.04
COL4A1-201ENST00000375820 SLAIN2Q9P270 581 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 H3BRJ5 948 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 OSBPP22059 807 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 TRIM59Q8IWR1 403 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 SSH3Q8TE77 659 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 BABAM1Q9NWV8 329 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PLEKHG3A1L390 1219 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PPP6R3Q5H9R7 873 aaPredicted RBP14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PUS7LQ9H0K6 701 aaKnown RBP14.79□□□□□ -0.04
COL4A1-201ENST00000375820 ITM2BQ9Y287 266 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PCDHA13Q9Y5I0 950 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 ATP10BO94823 1461 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 STAT2P52630 851 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 KCNA1Q09470 495 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 RPAINQ86UA6 219 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PCDHB6Q9Y5E3 794 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 MYL3P08590 195 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 CACNB3P54284 484 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 SLFNL1Q499Z3 407 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 APOA5Q6Q788 366 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 KLHL29Q96CT2 875 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 FAM8A1Q9UBU6 413 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 SLC12A6Q9UHW9 1150 aa14.79□□□□□ -0.04
COL4A1-201ENST00000375820 RRP15Q9Y3B9 282 aaKnown RBP14.79□□□□□ -0.04
COL4A1-201ENST00000375820 PGRMC1O00264 195 aaKnown RBP14.78□□□□□ -0.04
COL4A1-201ENST00000375820 PDE8BO95263 885 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 PLCG1P19174 1290 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 HADHAP40939 763 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 BPIFB4P59827 614 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 ZNF658Q5TYW1 1059 aaPredicted RBP14.78□□□□□ -0.04
COL4A1-201ENST00000375820 PIGOQ8TEQ8 1089 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 NCLNQ969V3 563 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 HEMGNQ9BXL5 484 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 ATF5Q9Y2D1 282 aaPredicted RBP14.78□□□□□ -0.04
COL4A1-201ENST00000375820 FBXO18Q8NFZ0 1043 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 MAP3K15Q6ZN16 1313 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 PER1O15534 1290 aaPredicted RBP14.78□□□□□ -0.04
COL4A1-201ENST00000375820 CYP21A2P08686 494 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 LMNB2Q03252 620 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 GALNT17Q6IS24 598 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 RNF139Q8WU17 664 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 SMYD3Q9H7B4 428 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 MLXIPLQ9NP71 852 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 MED4Q9NPJ6 270 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 CD2BP2O95400 341 aaKnown RBP14.78□□□□□ -0.04
COL4A1-201ENST00000375820 ANXA13P27216 316 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 DSTYKQ6XUX3 929 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 OR6B3Q8NGW1 331 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 TAF11Q15544 211 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 KRT80Q6KB66 452 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 MRFAP1L1Q96HT8 127 aa14.78□□□□□ -0.04
COL4A1-201ENST00000375820 PCCAP05165 728 aaPredicted RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 FBXW4P57775 412 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 TTC17Q96AE7 1141 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 XPOTO43592 962 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 SRGAP2O75044 1071 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 CASP1P29466 404 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 NFX1Q12986 1120 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 SYDE2Q5VT97 1194 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 FAF2Q96CS3 445 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 JPH2Q9BR39 696 aaPredicted RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 SARS2Q9NP81 518 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 EMILIN3Q9NT22 766 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 PRKAG2Q9UGJ0 569 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 LOC102724428A0A0B4J2F2 783 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 EEF1DP29692 281 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 EPHB4P54760 987 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 SIK1P57059 783 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 GSPT2Q8IYD1 628 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 CACTINQ8WUQ7 758 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 CEP19Q96LK0 163 aa14.77□□□□□ -0.04
COL4A1-201ENST00000375820 ABT1Q9ULW3 272 aaKnown RBP14.77□□□□□ -0.04
COL4A1-201ENST00000375820 A0A0G2JND7 137 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 ESRRBO95718 433 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 PLA2G4BP0C869 781 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 ARHGEF10O15013 1369 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 DR1Q01658 176 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 MAN2A1Q16706 1144 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 ASPRV1Q53RT3 343 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 THNSL1Q8IYQ7 743 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 NSUN7Q8NE18 718 aaKnown RBP14.77□□□□□ -0.05
COL4A1-201ENST00000375820 SPZ1Q9BXG8 430 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 XDHP47989 1333 aa14.77□□□□□ -0.05
COL4A1-201ENST00000375820 PEX3P56589 373 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms