RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 SGMS1Q86VZ5 419 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 CELF1Q92879 486 aaKnown RBP7.12□□□□□ -1.27
SMC1A-202ENST00000375340 ZNF577Q9BSK1 485 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 ZMYND12Q9H0C1 365 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 CAPN11Q9UMQ6 739 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 PIK3C2AO00443 1686 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 FAM196BA6NMK8 535 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 ABCB5Q2M3G0 1257 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 TTBK2Q6IQ55 1244 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 UNC13DQ70J99 1090 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 SFR1Q86XK3 245 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 MAGOHBQ96A72 148 aaKnown RBP7.12□□□□□ -1.27
SMC1A-202ENST00000375340 TEKT3Q9BXF9 490 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 LIMA1Q9UHB6 759 aaKnown RBP7.12□□□□□ -1.27
SMC1A-202ENST00000375340 GJA3Q9Y6H8 435 aa7.12□□□□□ -1.27
SMC1A-202ENST00000375340 KDM6AO15550 1401 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PNMA6FA0A0J9YX94 578 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 IFNB1P01574 187 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 FERP16591 822 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PPP2R5DQ14738 602 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 FBXW10Q5XX13 1052 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 HAUS1Q96CS2 278 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PBKQ96KB5 322 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 DBNDD1Q9H9R9 158 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L10C9JJH3 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ALAS1P13196 640 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PAXIP1Q6ZW49 1069 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 LMNTD2Q8IXW0 634 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 RNF10Q8N5U6 811 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 WHAMMQ8TF30 809 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 RSAD2Q8WXG1 361 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 N4BP2L2Q92802 583 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 RGPD2P0DJD1 1756 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 MYL1P05976 194 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 TOB1P50616 345 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 MKRN4PQ13434 485 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 BSPRYQ5W0U4 402 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 BRINP3Q76B58 766 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ADD3Q9UEY8 706 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 NOC2LQ9Y3T9 749 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L15C9J2P7 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L13C9JLJ4 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L11C9JVI0 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L18D6R9N7 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L22D6RA61 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L17D6RBQ6 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L19D6RCP7 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L20D6RJB6 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 I3L4J1 428 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PEX19P40855 299 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 DYNLT1P63172 113 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ACTN3Q08043 901 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L24Q0WX57 530 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 TRAF1Q13077 416 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 USP17L6PQ6QN14 398 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 NLRP14Q86W24 1093 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 RPUSD2Q8IZ73 545 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 HOOK2Q96ED9 719 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 KLHL14Q9P2G3 628 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 DAAM1Q9Y4D1 1078 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 CLRN2A0PK11 232 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 MAGOHP61326 146 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ITIH3Q06033 890 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 DMP1Q13316 513 aaPredicted RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PTPAQ15257 358 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ALX1Q15699 326 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 TBC1D22AQ8WUA7 517 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 INTUQ9ULD6 942 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 BZW2Q9Y6E2 419 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 SPATA31A3Q5VYP0 1347 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 UBR1Q8IWV7 1749 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ATP2B4P23634 1241 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 KLRK1P26718 216 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 LRRC63Q05C16 580 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 NEDD9Q14511 834 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 SGO2Q562F6 1265 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PDXDC1Q6P996 788 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 GRK7Q8WTQ7 553 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 SREK1Q8WXA9 508 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 CEP95Q96GE4 821 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 RIC8AQ9NPQ8 531 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 TFRCP02786 760 aaKnown RBP7.11□□□□□ -1.27
SMC1A-202ENST00000375340 HSPA1LP34931 641 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 CYP4F22Q6NT55 531 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 DNAI2Q9GZS0 605 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 BARHL2Q9NY43 387 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 SEPT10Q9P0V9 454 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PRDM4Q9UKN5 801 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 PCDHB4Q9Y5E5 795 aa7.11□□□□□ -1.27
SMC1A-202ENST00000375340 ACTN1P12814 892 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 PLS3P13797 630 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 TSNAXIP1Q2TAA8 658 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 SYDE2Q5VT97 1194 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 CASC4Q6P4E1 433 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 ABCB11O95342 1321 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 WDR91A4D1P6 747 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 HMGB1P1B2RPK0 211 aaPredicted RBP7.1□□□□□ -1.27
SMC1A-202ENST00000375340 SGK1O00141 431 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 MMEP08473 750 aa7.1□□□□□ -1.27
SMC1A-202ENST00000375340 PALM2Q8IXS6 379 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms