RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 SEC63Q9UGP8 760 aaKnown RBP16.29■□□□□ 0.2
PTCH1-202ENST00000375271 COL4A6Q14031 1691 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 KAT6AQ92794 2004 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-202ENST00000375271 M0QZ92 97 aa16.28■□□□□ 0.2
PTCH1-202ENST00000375271 HOXC8P31273 242 aa16.28■□□□□ 0.2
PTCH1-202ENST00000375271 NDUFV1P49821 464 aa16.28■□□□□ 0.2
PTCH1-202ENST00000375271 INPP4AQ96PE3 977 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-202ENST00000375271 U3KPZ7 1027 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-202ENST00000375271 RPLP2P05387 115 aaKnown RBP16.27■□□□□ 0.2
PTCH1-202ENST00000375271 ICAM3P32942 547 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 BMPR1AP36894 532 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 MRE11P49959 708 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 PPFIA1Q13136 1202 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 MKRN4PQ13434 485 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-202ENST00000375271 XRRA1Q6P2D8 792 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 PLEKHM2Q8IWE5 1019 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 CTCFLQ8NI51 663 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-202ENST00000375271 RUFY2Q8WXA3 655 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 GLG1Q92896 1179 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 TNPO1Q92973 898 aaKnown RBP16.27■□□□□ 0.2
PTCH1-202ENST00000375271 RRP36Q96EU6 259 aaKnown RBP16.27■□□□□ 0.2
PTCH1-202ENST00000375271 CDHR1Q96JP9 859 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 OSBPL3Q9H4L5 887 aa16.27■□□□□ 0.2
PTCH1-202ENST00000375271 SPATA31C2B4DYI2 1134 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 C5orf67F2Z3F1 127 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 SMAD4Q13485 552 aaKnown RBP16.26■□□□□ 0.19
PTCH1-202ENST00000375271 SEC23AQ15436 765 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 FAM26DQ5JW98 314 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 CYB5R4Q7L1T6 521 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 RIOX1Q9H6W3 641 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 ERAP1Q9NZ08 941 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 CD207Q9UJ71 328 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 TUBE1Q9UJT0 475 aa16.26■□□□□ 0.19
PTCH1-202ENST00000375271 STXBP3O00186 592 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 MARK3P27448 753 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 KIF5BP33176 963 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 TCF7P36402 384 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-202ENST00000375271 MRPS9P82933 396 aaKnown RBP16.25■□□□□ 0.19
PTCH1-202ENST00000375271 NHLH1Q02575 133 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 SMAD2Q15796 467 aaKnown RBP16.25■□□□□ 0.19
PTCH1-202ENST00000375271 PCNX4Q63HM2 1172 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 SMC5Q8IY18 1101 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 NCOA7Q8NI08 942 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 SENP7Q9BQF6 1050 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 PLVAPQ9BX97 442 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 DOCK5Q9H7D0 1870 aa16.25■□□□□ 0.19
PTCH1-202ENST00000375271 GRM6O15303 877 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 MBTPS2O43462 519 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 MMP1P03956 469 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 STAG3L1P0CL83 205 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 IRS1P35568 1242 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 IGBP1P78318 339 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 NUCB1Q02818 461 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 GRIK4Q16099 956 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 IER5Q5VY09 327 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 TSHZ1Q6ZSZ6 1077 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 FBXL18Q96ME1 805 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 BCAS3Q9H6U6 928 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 EHMT1Q9H9B1 1298 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 LRFN2Q9ULH4 789 aa16.24■□□□□ 0.19
PTCH1-202ENST00000375271 PIEZO1Q92508 2521 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 FRMPD4Q14CM0 1322 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 POTEB3A0JP26 581 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 CHRNA1P02708 482 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 IBSPP21815 317 aaPredicted RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 HYAL1Q12794 435 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 COL19A1Q14993 1142 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 SPOUT1Q5T280 376 aaKnown RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 POTEBQ6S5H4 581 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 SUGP1Q8IWZ8 645 aaKnown RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 SEPT1Q8WYJ6 367 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 FTHL17Q9BXU8 183 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 FAM49AQ9H0Q0 323 aaPredicted RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 SMARCAD1Q9H4L7 1026 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 AZI2Q9H6S1 392 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 ALG13Q9NP73 1137 aaKnown RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 PKD2L1Q9P0L9 805 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 MUTYHQ9UIF7 546 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 CDY2AQ9Y6F7 541 aa16.23■□□□□ 0.19
PTCH1-202ENST00000375271 BAZ2BQ9UIF8 2168 aaKnown RBP16.23■□□□□ 0.19
PTCH1-202ENST00000375271 C19orf67A6NJJ6 358 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 SPDYE3A6NKU9 549 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 RBAK-RBAKDNI3L0D1 243 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 MRPS6P82932 125 aaKnown RBP16.22■□□□□ 0.19
PTCH1-202ENST00000375271 LPIN1Q14693 890 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 USP17L6PQ6QN14 398 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 CASC1Q6TDU7 716 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 NFXL1Q6ZNB6 911 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 RUFY4Q6ZNE9 571 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 HFE2Q6ZVN8 426 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 DNAJB3Q8WWF6 145 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 CLP1Q92989 425 aaKnown RBP16.22■□□□□ 0.19
PTCH1-202ENST00000375271 GPRASP2Q96D09 838 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 OSBPL7Q9BZF2 842 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 TRPC6Q9Y210 931 aa16.22■□□□□ 0.19
PTCH1-202ENST00000375271 RRN3P2A6NIE6 340 aa16.21■□□□□ 0.19
PTCH1-202ENST00000375271 ENPP3O14638 875 aa16.21■□□□□ 0.19
PTCH1-202ENST00000375271 CYTH3O43739 400 aa16.21■□□□□ 0.19
PTCH1-202ENST00000375271 GNAQP50148 359 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms