RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 KLHL23Q8NBE8 558 aa17.18■□□□□ 0.34
VAMP4-202ENST00000367740 KREMEN2Q8NCW0 462 aa17.18■□□□□ 0.34
VAMP4-202ENST00000367740 PANK1Q8TE04 598 aa17.18■□□□□ 0.34
VAMP4-202ENST00000367740 ATP8B4Q8TF62 1192 aa17.18■□□□□ 0.34
VAMP4-202ENST00000367740 MAF1Q9H063 256 aa17.18■□□□□ 0.34
VAMP4-202ENST00000367740 TPRP12270 2363 aaKnown RBP17.17■□□□□ 0.34
VAMP4-202ENST00000367740 H3BRB1 525 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 BRD1O95696 1058 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 GGPS1O95749 300 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 SP100P23497 879 aaPredicted RBP17.17■□□□□ 0.34
VAMP4-202ENST00000367740 CELF3Q5SZQ8 465 aaKnown RBP17.17■□□□□ 0.34
VAMP4-202ENST00000367740 CNTNAP3BQ96NU0 1288 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 CNTNAP3Q9BZ76 1288 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 TUT1Q9H6E5 874 aaKnown RBP17.17■□□□□ 0.34
VAMP4-202ENST00000367740 ECHDC1Q9NTX5 307 aa17.17■□□□□ 0.34
VAMP4-202ENST00000367740 CEP250Q9BV73 2442 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 NR3C2P08235 984 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 SNHG28P0DPA3 235 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 GHRP10912 638 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 MTMR3Q13615 1198 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 ARHGEF16Q5VV41 709 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 ASTLQ6HA08 431 aaPredicted RBP17.16■□□□□ 0.34
VAMP4-202ENST00000367740 CPVLQ9H3G5 476 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 SMOC2Q9H3U7 446 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 TLE6Q9H808 572 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 EHMT1Q9H9B1 1298 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 PXMP2Q9NR77 195 aa17.16■□□□□ 0.34
VAMP4-202ENST00000367740 ACACBO00763 2458 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 ENPP3O14638 875 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 PER2O15055 1255 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 ORC4O43929 436 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 SMARCA5O60264 1052 aaPredicted RBP17.15■□□□□ 0.34
VAMP4-202ENST00000367740 CHRNA1P02708 482 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 LGALS2P05162 132 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 UBA1P22314 1058 aaKnown RBP17.15■□□□□ 0.34
VAMP4-202ENST00000367740 SP2Q02086 613 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 TSHZ3Q63HK5 1081 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 UBALD2Q8IYN6 164 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 CMTR2Q8IYT2 770 aaKnown RBP17.15■□□□□ 0.34
VAMP4-202ENST00000367740 LINC01599Q8WXQ3 324 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 NEK1Q96PY6 1258 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 S1PR5Q9H228 398 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 SETD4Q9NVD3 440 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 SORCS3Q9UPU3 1222 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 ABCB11O95342 1321 aa17.15■□□□□ 0.34
VAMP4-202ENST00000367740 KAT6AQ92794 2004 aa17.14■□□□□ 0.34
VAMP4-202ENST00000367740 ADAM17P78536 824 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 LPIN1Q14693 890 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 CDC37Q16543 378 aaPredicted RBP17.14■□□□□ 0.33
VAMP4-202ENST00000367740 CRIPAKQ8N1N5 446 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 LRRCC1Q9C099 1032 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 ANAPC4Q9UJX5 808 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 SUPT16HQ9Y5B9 1047 aaKnown RBP17.14■□□□□ 0.33
VAMP4-202ENST00000367740 CCDC171Q6TFL3 1326 aa17.14■□□□□ 0.33
VAMP4-202ENST00000367740 FGRP09769 529 aa17.13■□□□□ 0.33
VAMP4-202ENST00000367740 GOLGA8HP0CJ92 632 aa17.13■□□□□ 0.33
VAMP4-202ENST00000367740 MGAT3Q09327 533 aa17.13■□□□□ 0.33
VAMP4-202ENST00000367740 DUSP6Q16828 381 aa17.13■□□□□ 0.33
VAMP4-202ENST00000367740 PAN2Q504Q3 1202 aaKnown RBP17.13■□□□□ 0.33
VAMP4-202ENST00000367740 FNDC1Q4ZHG4 1894 aaPredicted RBP17.13■□□□□ 0.33
VAMP4-202ENST00000367740 LOXHD1Q8IVV2 1947 aa17.13■□□□□ 0.33
VAMP4-202ENST00000367740 GNAT1P11488 350 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 KCNC3Q14003 757 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 CWF19L1Q69YN2 538 aaKnown RBP17.12■□□□□ 0.33
VAMP4-202ENST00000367740 KCNV1Q6PIU1 500 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 MCF2L2Q86YR7 1114 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 LMBR1Q8WVP7 490 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 GPKOWQ92917 476 aaPredicted RBP eCLIP17.12■□□□□ 0.33
VAMP4-202ENST00000367740 PDCD2LQ9BRP1 358 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 UBA5Q9GZZ9 404 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 BCAS3Q9H6U6 928 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 TCP11L1Q9NUJ3 509 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 CDH22Q9UJ99 828 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 CACNA1GO43497 2377 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 CHD6Q8TD26 2715 aa17.12■□□□□ 0.33
VAMP4-202ENST00000367740 FSD2A1L4K1 749 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 CLCN5P51795 746 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 ZMYM1Q5SVZ6 1142 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 ANKRD54Q6NXT1 300 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 SYCE2Q6PIF2 218 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 TRIM50Q86XT4 487 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 CDCA3Q99618 268 aaPredicted RBP17.11■□□□□ 0.33
VAMP4-202ENST00000367740 APOL5Q9BWW9 433 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 TSHZ2Q9NRE2 1034 aa17.11■□□□□ 0.33
VAMP4-202ENST00000367740 C2CD4DB7Z1M9 353 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 OPLAHO14841 1288 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 PPFIA3O75145 1194 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 ARP10275 920 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 HSPD1P10809 573 aaKnown RBP17.1■□□□□ 0.33
VAMP4-202ENST00000367740 MYCLP12524 364 aaPredicted RBP17.1■□□□□ 0.33
VAMP4-202ENST00000367740 ARHGAP4P98171 946 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 PUM1Q14671 1186 aaKnown RBP eCLIP17.1■□□□□ 0.33
VAMP4-202ENST00000367740 RRP12Q5JTH9 1297 aaKnown RBP17.1■□□□□ 0.33
VAMP4-202ENST00000367740 FBXO47Q5MNV8 452 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 GPATCH4Q5T3I0 446 aaKnown RBP17.1■□□□□ 0.33
VAMP4-202ENST00000367740 TMEM184AQ6ZMB5 413 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 RUFY4Q6ZNE9 571 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 KIAA2013Q8IYS2 634 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 IL31RAQ8NI17 732 aa17.1■□□□□ 0.33
VAMP4-202ENST00000367740 MICAL1Q8TDZ2 1067 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms