RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 STAM2O75886 525 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 KRT76Q01546 638 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-204ENST00000367248 PAGE5Q96GU1 130 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 FAM167AQ96KS9 214 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 MAN1B1Q9UKM7 699 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 RASSF7Q02833 373 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 MTMR1Q13613 665 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 FAM20AQ96MK3 541 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 GCNAQ96QF7 691 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 SAR1BQ9Y6B6 198 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 TYW5A2RUC4 315 aaKnown RBP12.62□□□□□ -0.39
SYNE1-204ENST00000367248 IVLP07476 585 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 CTSHP09668 335 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 STAT3P40763 770 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 ALCAMQ13740 583 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 GABPB2Q8TAK5 448 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-204ENST00000367248 PCDHB4Q9Y5E5 795 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 TFRCP02786 760 aaKnown RBP12.62□□□□□ -0.39
SYNE1-204ENST00000367248 C6orf222P0C671 652 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-204ENST00000367248 MYBP10242 640 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 DDIT3P35638 169 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 ZBTB16Q05516 673 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 OXER1Q8TDS5 423 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 PRDM10Q9NQV6 1147 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 RAB20Q9NX57 234 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 WDR64B1ANS9 1081 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 CFAP157Q5JU67 520 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 FBXO33Q7Z6M2 555 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 ANKRD13CQ8N6S4 541 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 RPGRIP1Q96KN7 1286 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 IRAK4Q9NWZ3 460 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 PPP2R2CQ9Y2T4 447 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 EPN1Q9Y6I3 576 aaPredicted RBP12.61□□□□□ -0.39
SYNE1-204ENST00000367248 CLTCQ00610 1675 aaKnown RBP12.61□□□□□ -0.39
SYNE1-204ENST00000367248 POTEMA6NI47 508 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 MXI1P50539 228 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 LONRF2Q1L5Z9 754 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 SBK1Q52WX2 424 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 STYK1Q6J9G0 422 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 ZFYVE28Q9HCC9 887 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 GDAQ9Y2T3 454 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 HYOU1Q9Y4L1 999 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 FBF1Q8TES7 1133 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 ACAD9Q9H845 621 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 CCL15-CCL14A0A0B4J2E2 113 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 PAK2Q13177 524 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 CCL15Q16663 113 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 BANK1Q8NDB2 785 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 PIGOQ8TEQ8 1089 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 BZW2Q9Y6E2 419 aaKnown RBP12.61□□□□□ -0.39
SYNE1-204ENST00000367248 DPF3Q92784 378 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 KAZNQ674X7 775 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 STOX1Q6ZVD7 989 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 FASTKD5Q7L8L6 764 aaKnown RBP12.61□□□□□ -0.39
SYNE1-204ENST00000367248 GAS2L3Q86XJ1 694 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 ABCF3Q9NUQ8 709 aa12.61□□□□□ -0.39
SYNE1-204ENST00000367248 RNF8O76064 485 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ETF1P62495 437 aaKnown RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 BARHL2Q9NY43 387 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 RWDD2AQ9UIY3 292 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 FLT1P17948 1338 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 MCPH1Q8NEM0 835 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 CALCOCO1Q9P1Z2 691 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 PIK3C2BO00750 1634 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 SAT1P21673 171 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 NEDD9Q14511 834 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 COL23A1Q86Y22 540 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 SPATA33Q96N06 139 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ALDH8A1Q9H2A2 487 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 NYAP2Q9P242 653 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 MOSPD1Q9UJG1 213 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 MST1RQ04912 1400 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 KBTBD13C9JR72 458 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ALDH3A1P30838 453 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 VPS41P49754 854 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ORC2Q13416 577 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ADAT2Q7Z6V5 191 aaKnown RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 K7ERI5 159 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 LLGL1Q15334 1064 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 CCDC89Q8N998 374 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 CACTINQ8WUQ7 758 aaKnown RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 ZNF70Q9UC06 446 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 GNAT1P11488 350 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 TCP1P17987 556 aaKnown RBP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 U2AF2P26368 475 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNE1-204ENST00000367248 PRELPP51888 382 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 KSR1Q8IVT5 923 aa12.6□□□□□ -0.39
SYNE1-204ENST00000367248 IQSEC2Q5JU85 1478 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 GOLGA8SH3BPF8 625 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 KCNK3O14649 394 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 ANXA13P27216 316 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 ATP5DP30049 168 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CDC42EP5Q6NZY7 148 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CROCCP2Q86T23 111 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 FAM151AQ8WW52 585 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 MTMR4Q9NYA4 1195 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 LMCD1Q9NZU5 365 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CEP152O94986 1710 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms