RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SEPT14Q6ZU15 432 aa20.83■□□□□ 0.92
CLN3-206ENST00000360019 MIER3Q7Z3K6 550 aa20.83■□□□□ 0.92
CLN3-206ENST00000360019 MORC4Q8TE76 937 aa20.83■□□□□ 0.92
CLN3-206ENST00000360019 CBX8Q9HC52 389 aa20.83■□□□□ 0.92
CLN3-206ENST00000360019 B4DLN1 442 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 ZNF165P49910 485 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 PSMC6P62333 389 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 SP2Q02086 613 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 CRHR2Q13324 411 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 EEPD1Q7L9B9 569 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 PLEKHH3Q7Z736 793 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 TRIML1Q8N9V2 468 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 MPHOSPH6Q99547 160 aaKnown RBP20.82■□□□□ 0.92
CLN3-206ENST00000360019 C7orf25Q9BPX7 421 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 ZFYVE28Q9HCC9 887 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 CREBZFQ9NS37 354 aa20.82■□□□□ 0.92
CLN3-206ENST00000360019 WRAP73Q9P2S5 460 aaPredicted RBP20.82■□□□□ 0.92
CLN3-206ENST00000360019 NFASCO94856 1347 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 MYMKA6NI61 221 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 RPN1P04843 607 aaKnown RBP20.81■□□□□ 0.92
CLN3-206ENST00000360019 XRCC6P12956 609 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-206ENST00000360019 APLP1P51693 650 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 KRT76Q01546 638 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 NOGQ13253 232 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 MCM3APO60318 1980 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 LOC102724159A0A0B4J2E5 919 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 KLRC4O43908 158 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 AOC2O75106 756 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 CAVIN2O95810 425 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 PLA2G4BP0C869 781 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 AMPD3Q01432 767 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 PWP2Q15269 919 aaKnown RBP20.81■□□□□ 0.92
CLN3-206ENST00000360019 DEFB115Q30KQ5 88 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 L1TD1Q5T7N2 865 aaKnown RBP20.81■□□□□ 0.92
CLN3-206ENST00000360019 TPH2Q8IWU9 490 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 LXNQ9BS40 222 aa20.81■□□□□ 0.92
CLN3-206ENST00000360019 PLXNA1Q9UIW2 1896 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 SLC12A3P55017 1021 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 ZNF746Q6NUN9 644 aaPredicted RBP20.8■□□□□ 0.92
CLN3-206ENST00000360019 LUZP1Q86V48 1076 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 BANK1Q8NDB2 785 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 NEK9Q8TD19 979 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 CAPNS2Q96L46 248 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 SENP7Q9BQF6 1050 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 DNM3Q9UQ16 869 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 TELO2Q9Y4R8 837 aa20.8■□□□□ 0.92
CLN3-206ENST00000360019 DOCK5Q9H7D0 1870 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 WDR64B1ANS9 1081 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 MUTP22033 750 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 JAK3P52333 1124 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 KCTD17Q8N5Z5 321 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 JPH1Q9HDC5 661 aaPredicted RBP20.79■□□□□ 0.92
CLN3-206ENST00000360019 SAMM50Q9Y512 469 aa20.79■□□□□ 0.92
CLN3-206ENST00000360019 ASB14A6NK59 587 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 CA12O43570 354 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ECM2O94769 699 aaPredicted RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 SSBP05455 408 aaKnown RBP eCLIP20.78■□□□□ 0.92
CLN3-206ENST00000360019 P4HBP07237 508 aaKnown RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 UBA1P22314 1058 aaKnown RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 SFNP31947 248 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 IQCB1Q15051 598 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ARMCX2Q7L311 632 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 FBXO16Q8IX29 292 aaPredicted RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 TCEAL9Q9UHQ7 104 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ZNF236Q9UL36 1845 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 SLC15A5A6NIM6 579 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 SORBS3O60504 671 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ASIC1P78348 528 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 KCNB1Q14721 858 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 KMT5BQ4FZB7 885 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 CNNM4Q6P4Q7 775 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 DYMQ7RTS9 669 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ZNF467Q7Z7K2 595 aaPredicted RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 SYT2Q8N9I0 419 aaPredicted RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 PIGOQ8TEQ8 1089 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 DDX12PQ92771 950 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 NAT10Q9H0A0 1025 aaKnown RBP20.78■□□□□ 0.92
CLN3-206ENST00000360019 SLC9A2Q9UBY0 812 aa20.78■□□□□ 0.92
CLN3-206ENST00000360019 ZBTB39O15060 712 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 ARIH2O95376 493 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 EYA4O95677 639 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 CYP11B2P19099 503 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 DEKP35659 375 aaKnown RBP20.77■□□□□ 0.92
CLN3-206ENST00000360019 MORN1Q5T089 497 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 CYFIP1Q7L576 1253 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 DPP9Q86TI2 863 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 SMYD4Q8IYR2 804 aaPredicted RBP20.77■□□□□ 0.92
CLN3-206ENST00000360019 MLKLQ8NB16 471 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 RDM1Q8NG50 284 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 BPIFA3Q9BQP9 254 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 LRRC27Q9C0I9 530 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 BHMT2Q9H2M3 363 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 RMND1Q9NWS8 449 aa20.77■□□□□ 0.92
CLN3-206ENST00000360019 DOCK3Q8IZD9 2030 aa20.77■□□□□ 0.91
CLN3-206ENST00000360019 RHOBTB3O94955 611 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 TGFB3P10600 412 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 SP4Q02446 784 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 UGCGQ16739 394 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 GPBP1Q86WP2 473 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 DHX40Q8IX18 779 aaKnown RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms