RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TINF2Q9BSI4 451 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 NT5C3AQ9H0P0 336 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 CUEDC2Q9H467 287 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 BLOC1S4Q9NUP1 217 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 SLITRK3O94933 977 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 ARIH2O95376 493 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 PRR29P0C7W0 189 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 CYP2B6P20813 491 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 UBA1P22314 1058 aaKnown RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 RGS2P41220 211 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 SP3Q02447 781 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 POSTNQ15063 836 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 ZNF746Q6NUN9 644 aaPredicted RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 CCDC34Q96HJ3 373 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 KATNBL1Q9H079 304 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 JPH1Q9HDC5 661 aaPredicted RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 VTA1Q9NP79 307 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 PDGFCQ9NRA1 345 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 KIAA1468Q9P260 1216 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 STK17AQ9UEE5 414 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 HOOK1Q9UJC3 728 aaKnown RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 DDX41Q9UJV9 622 aaKnown RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 THSD7BQ9C0I4 1608 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 SYNGAP1Q96PV0 1343 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 POTEFA5A3E0 1075 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 SORBS3O60504 671 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 LY6KQ17RY6 165 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 KCNV1Q6PIU1 500 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 POTEGQ6S5H5 508 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 CYFIP1Q7L576 1253 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 MSL3Q8N5Y2 521 aaKnown RBP22.29■■□□□ 1.16
CLN3-205ENST00000359984 TUFT1Q9NNX1 390 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 KBTBD4Q9NVX7 518 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 FLRT1Q9NZU1 646 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 SLC9A2Q9UBY0 812 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 TCEAL9Q9UHQ7 104 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 TELO2Q9Y4R8 837 aa22.29■■□□□ 1.16
CLN3-205ENST00000359984 CAP1Q01518 475 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 CTTNQ14247 550 aaKnown RBP22.28■■□□□ 1.16
CLN3-205ENST00000359984 TAPT1Q6NXT6 567 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 CCDC62Q6P9F0 684 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 SAMM50Q9Y512 469 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 WDR64B1ANS9 1081 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 HSPA6P17066 643 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 SFNP31947 248 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 JAK3P52333 1124 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 NEDD9Q14511 834 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 TPH2Q8IWU9 490 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 GIMAP8Q8ND71 665 aaPredicted RBP22.28■■□□□ 1.16
CLN3-205ENST00000359984 RAD54LQ92698 747 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 APBA2Q99767 749 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 MAGEF1Q9HAY2 307 aa22.28■■□□□ 1.16
CLN3-205ENST00000359984 A0A087WWV3 80 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 FSD2A1L4K1 749 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 CASP1P29466 404 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 MCM6Q14566 821 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 CCL14Q16627 93 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 LRSAM1Q6UWE0 723 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 RDM1Q8NG50 284 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 NEK9Q8TD19 979 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 SCFD2Q8WU76 684 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 FUCA2Q9BTY2 467 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 MGAMO43451 1857 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 ZSWIM8A7E2V4 1837 aa22.27■■□□□ 1.16
CLN3-205ENST00000359984 RBM47A0AV96 593 aaKnown RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 E9PMD0 336 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 GGPS1O95749 300 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 ACTR2P61160 394 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 PSMC6P62333 389 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 SP4Q02446 784 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 TTLL4Q14679 1199 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 TMEM63BQ5T3F8 832 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 SMAP1Q8IYB5 467 aaPredicted RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 BANK1Q8NDB2 785 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 LARP4BQ92615 738 aaKnown RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 WRAP73Q9P2S5 460 aaPredicted RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 GABRQQ9UN88 632 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 PCDHA5Q9Y5H7 936 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 FARP2O94887 1054 aaPredicted RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 P4HBP07237 508 aaKnown RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 TXNP10599 105 aaKnown RBP22.26■■□□□ 1.15
CLN3-205ENST00000359984 MUTP22033 750 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 KIF22Q14807 665 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 ABHD16BQ9H3Z7 469 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 TUBE1Q9UJT0 475 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 PCDHA10Q9Y5I2 948 aa22.26■■□□□ 1.15
CLN3-205ENST00000359984 GPR25O00155 361 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 GTPBP6O43824 516 aaPredicted RBP22.25■■□□□ 1.15
CLN3-205ENST00000359984 IGHA2P01877 340 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 C1QTNF8P60827 252 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 DPYDQ12882 1025 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 ACVR2BQ13705 512 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 DHX8Q14562 1220 aaKnown RBP22.25■■□□□ 1.15
CLN3-205ENST00000359984 OLFML2BQ68BL8 750 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 METTL7BQ6UX53 244 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 SV2BQ7L1I2 683 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 LXNQ9BS40 222 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 BLZF1Q9H2G9 400 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 DNM3Q9UQ16 869 aa22.25■■□□□ 1.15
CLN3-205ENST00000359984 DOCK5Q9H7D0 1870 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms