RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 BECN2A8MW95 431 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 SPATA31C2B4DYI2 1134 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 KLRC4O43908 158 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 PLA2G4BP0C869 781 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 MUTP22033 750 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 ASIC1P78348 528 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 KCNB1Q14721 858 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 DHX40Q8IX18 779 aaKnown RBP20.88■□□□□ 0.93
CLN3-204ENST00000357857 ANP32BQ92688 251 aaKnown RBP20.88■□□□□ 0.93
CLN3-204ENST00000357857 HHIPL1Q96JK4 782 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 FGD4Q96M96 766 aa20.88■□□□□ 0.93
CLN3-204ENST00000357857 GOLGA6L19H0YKK7 550 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 SLITRK3O94933 977 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 KCNA2P16389 499 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 ICAM3P32942 547 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 KRT76Q01546 638 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 CTTNQ14247 550 aaKnown RBP20.87■□□□□ 0.93
CLN3-204ENST00000357857 TAF1CQ15572 869 aaPredicted RBP20.87■□□□□ 0.93
CLN3-204ENST00000357857 IFNL1Q8IU54 200 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 TPH2Q8IWU9 490 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 AOPEPQ8N6M6 819 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 CCDC47Q96A33 483 aaKnown RBP20.87■□□□□ 0.93
CLN3-204ENST00000357857 NFASCO94856 1347 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 ADGRA2Q96PE1 1338 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 SSBP05455 408 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLN3-204ENST00000357857 SREBF2Q12772 1141 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 KMT5BQ4FZB7 885 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 CNNM4Q6P4Q7 775 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 ABRAQ8N0Z2 381 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 IVNS1ABPQ9Y6Y0 642 aa20.87■□□□□ 0.93
CLN3-204ENST00000357857 LOC102724159A0A0B4J2E5 919 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 STRNO43815 780 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 JAK3P52333 1124 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 PSMC6P62333 389 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 PWP2Q15269 919 aaKnown RBP20.86■□□□□ 0.93
CLN3-204ENST00000357857 ZNF658Q5TYW1 1059 aaPredicted RBP20.86■□□□□ 0.93
CLN3-204ENST00000357857 SEPT14Q6ZU15 432 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 SAMM50Q9Y512 469 aa20.86■□□□□ 0.93
CLN3-204ENST00000357857 WDR64B1ANS9 1081 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 RHOBTB3O94955 611 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 SFNP31947 248 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 SLC12A3P55017 1021 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 CT47A1Q5JQC4 288 aaPredicted RBP20.85■□□□□ 0.93
CLN3-204ENST00000357857 ZNF746Q6NUN9 644 aaPredicted RBP20.85■□□□□ 0.93
CLN3-204ENST00000357857 DDX12PQ92771 950 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 LXNQ9BS40 222 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 BMP2KQ9NSY1 1161 aaPredicted RBP20.85■□□□□ 0.93
CLN3-204ENST00000357857 EXOC1Q9NV70 894 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 CPA4Q9UI42 421 aa20.85■□□□□ 0.93
CLN3-204ENST00000357857 SMTNL1A8MU46 457 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 EYA4O95677 639 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 P4HBP07237 508 aaKnown RBP20.84■□□□□ 0.93
CLN3-204ENST00000357857 ADORA2AP29274 412 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 MAPK4P31152 587 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 UNC13DQ70J99 1090 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 DYMQ7RTS9 669 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 GPR142Q7Z601 462 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 GPBP1Q86WP2 473 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 SYT2Q8N9I0 419 aaPredicted RBP20.84■□□□□ 0.93
CLN3-204ENST00000357857 BANK1Q8NDB2 785 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 RDM1Q8NG50 284 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 SENP7Q9BQF6 1050 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 PVALEFA0A1B0GWK0 134 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 IKBKBO14920 756 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 CCNE2O96020 404 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 PAXIP1Q6ZW49 1069 aaPredicted RBP20.84■□□□□ 0.93
CLN3-204ENST00000357857 SMYD4Q8IYR2 804 aaPredicted RBP20.84■□□□□ 0.93
CLN3-204ENST00000357857 MORC4Q8TE76 937 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 NACC1Q96RE7 527 aa20.84■□□□□ 0.93
CLN3-204ENST00000357857 JPH1Q9HDC5 661 aaPredicted RBP20.84■□□□□ 0.93
CLN3-204ENST00000357857 ZNF236Q9UL36 1845 aa20.83■□□□□ 0.93
CLN3-204ENST00000357857 ASB14A6NK59 587 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 CD44P16070 742 aaKnown RBP20.83■□□□□ 0.92
CLN3-204ENST00000357857 CYP11B2P19099 503 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 ZNF792Q3KQV3 632 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 PLEKHH3Q7Z736 793 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 GTPBP4Q9BZE4 634 aaKnown RBP20.83■□□□□ 0.92
CLN3-204ENST00000357857 BHMT2Q9H2M3 363 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 ZSWIM4Q9H7M6 989 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 WRAP73Q9P2S5 460 aaPredicted RBP20.83■□□□□ 0.92
CLN3-204ENST00000357857 SLC9A2Q9UBY0 812 aa20.83■□□□□ 0.92
CLN3-204ENST00000357857 PPP1R3GB7ZBB8 358 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 COBLO75128 1261 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 ERCC5P28715 1186 aaPredicted RBP20.82■□□□□ 0.92
CLN3-204ENST00000357857 MYL5Q02045 173 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 SMAP1Q8IYB5 467 aaPredicted RBP20.82■□□□□ 0.92
CLN3-204ENST00000357857 PIGOQ8TEQ8 1089 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 DNAJC19Q96DA6 116 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 ZFYVE28Q9HCC9 887 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 GDAQ9Y2T3 454 aa20.82■□□□□ 0.92
CLN3-204ENST00000357857 IDEP14735 1019 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 QARSP47897 775 aaKnown RBP20.81■□□□□ 0.92
CLN3-204ENST00000357857 TM4SF4P48230 202 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 TPM4P67936 248 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 SP2Q02086 613 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 GRM1Q13255 1194 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 GRB14Q14449 540 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 NCAPHQ15003 741 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 EEPD1Q7L9B9 569 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 GIMAP8Q8ND71 665 aaPredicted RBP20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms