RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MLXIPLQ9NP71 852 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 PPP1R37O75864 691 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 GSTA1P08263 222 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 GSTA2P09210 222 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 PRR29P0C7W0 189 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ZBTB17Q13105 803 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 LRRC53A6NM62 1247 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 PRCPP42785 496 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ANKRD20A4Q4UJ75 823 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ANKRD20A8PQ5CZ79 823 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ANKRD20A2Q5SQ80 823 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ANKRD20A1Q5TYW2 823 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 SYT2Q8N9I0 419 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 POMGNT1Q8WZA1 660 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 DDX47Q9H0S4 455 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 USP40Q9NVE5 1235 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 EPS15L1Q9UBC2 864 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 PPRC1Q5VV67 1664 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 PODXLO00592 558 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 GYG2O15488 501 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 KRT80Q6KB66 452 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 TRIM50Q86XT4 487 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 YY1AP1Q9H869 796 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 A0A0G2JND7 137 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 PSMD2Q13200 908 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 JADE1Q6IE81 842 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 SPATA4Q8NEY3 305 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 CXorf56Q9H5V9 222 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 MAML1Q92585 1016 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 CHMP6Q96FZ7 201 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 SUDS3Q9H7L9 328 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 INO80Q9ULG1 1556 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 SPARCL1Q14515 664 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 AZI2Q9H6S1 392 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 ETNK1Q9HBU6 452 aa21.09■□□□□ 0.97
CCDC88B-202ENST00000356786 DYNLL1P63167 89 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 GFPT1Q06210 699 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 UBE2TQ9NPD8 197 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 FOXN1O15353 648 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 P4HA1P13674 534 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 BBS9Q3SYG4 887 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 HIPK4Q8NE63 616 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 CHURC1Q8WUH1 139 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 RIN2Q8WYP3 895 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 TRIM11Q96F44 468 aa21.08■□□□□ 0.97
CCDC88B-202ENST00000356786 TARSL2A2RTX5 802 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 LMNAP02545 664 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 GARSP41250 739 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 BASP1P80723 227 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 SRRM1Q8IYB3 904 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 TAF1DQ9H5J8 278 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-202ENST00000356786 TESPA1A2RU30 521 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 TTC4O95801 387 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 GTF2IP78347 998 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 MAP7D3Q8IWC1 876 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 SH2D3CQ8N5H7 860 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 DYDC2Q96IM9 177 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 MRPL46Q9H2W6 279 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 ATP5HO75947 161 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 FOSP01100 380 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 SHC4Q6S5L8 630 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 SDCCAG3Q96C92 435 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 ERBB3P21860 1342 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 MEIS1O00470 390 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 APOEP02649 317 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 GAP43P17677 238 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 YARSP54577 528 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 RFX6Q8HWS3 928 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 TEKT3Q9BXF9 490 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 SMYD2Q9NRG4 433 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 SETBP1Q9Y6X0 1596 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 RASA4BC9J798 803 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 RASA4O43374 803 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 TOM1L1O75674 476 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 GCFC2P16383 781 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 CARD10Q9BWT7 1032 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 VIPAS39Q9H9C1 493 aa21.07■□□□□ 0.96
CCDC88B-202ENST00000356786 POLR2MP0CAP2 368 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 DYNLT1P63172 113 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 BIRC2Q13490 618 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 RWDD2BP57060 319 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 CEP70Q8NHQ1 597 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 MMS19Q96T76 1030 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 SEPT10Q9P0V9 454 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 HNRNPDLO14979 420 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 CREB3O43889 395 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 PLEKHA8P1O95397 391 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 FAM98CQ17RN3 349 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 LRRC1Q9BTT6 524 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 TRIM55Q9BYV6 548 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 PCIF1Q9H4Z3 704 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 ANLNQ9NQW6 1124 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 DMP1Q13316 513 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 RHOT2Q8IXI1 618 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 PIGSQ96S52 555 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 EFHD1Q9BUP0 239 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 OSBPL1AQ9BXW6 950 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 PCDHB4Q9Y5E5 795 aa21.06■□□□□ 0.96
CCDC88B-202ENST00000356786 CYP2D7A0A087X1C5 515 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms