RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZEB2O60315 1214 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 OR52Z1P0C646 297 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 ZNF286BP0CG31 522 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 PURAQ00577 322 aaKnown RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 SF3A1Q15459 793 aaKnown RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 B3GNT9Q6UX72 402 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 IPO9Q96P70 1041 aaKnown RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 TTC12Q9H892 705 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 ELP1O95163 1332 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 MOXD2PA6NHM9 499 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 CAPN2P17655 700 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 KRT76Q01546 638 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 CEBPZQ03701 1054 aaKnown RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 UTP14CQ5TAP6 766 aaKnown RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 ZNF746Q6NUN9 644 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-203ENST00000354098 PCDHA12Q9UN75 941 aa25.01■■□□□ 1.59
SHMT1-203ENST00000354098 A0A1W2PQ45 241 aaPredicted RBP25■■□□□ 1.59
SHMT1-203ENST00000354098 A0A1W2PQY0 241 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 ATG7O95352 703 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 COL6A1P12109 1028 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 ABHD15Q6UXT9 468 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 TRIM50Q86XT4 487 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 USP28Q96RU2 1077 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 C16orf70Q9BSU1 422 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 SENP6Q9GZR1 1112 aaPredicted RBP25■■□□□ 1.59
SHMT1-203ENST00000354098 POLR3EQ9NVU0 708 aa25■■□□□ 1.59
SHMT1-203ENST00000354098 EML1O00423 815 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 LGALS2P05162 132 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 ATP2C1P98194 919 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-203ENST00000354098 SPIRE1Q08AE8 756 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 PPP2R5CQ13362 524 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 UBE2Q1Q7Z7E8 422 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 KAT2BQ92831 832 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 CHAMP1Q96JM3 812 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 PCYT2Q99447 389 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 TFIP11Q9UBB9 837 aaKnown RBP24.99■■□□□ 1.59
SHMT1-203ENST00000354098 SAMM50Q9Y512 469 aa24.99■■□□□ 1.59
SHMT1-203ENST00000354098 PSMC6P62333 389 aa24.98■■□□□ 1.59
SHMT1-203ENST00000354098 IL17AQ16552 155 aa24.98■■□□□ 1.59
SHMT1-203ENST00000354098 PPP1R13LQ8WUF5 828 aa24.98■■□□□ 1.59
SHMT1-203ENST00000354098 DISC1Q9NRI5 854 aa24.98■■□□□ 1.59
SHMT1-203ENST00000354098 TCEAL9Q9UHQ7 104 aa24.98■■□□□ 1.59
SHMT1-203ENST00000354098 KPNA6O60684 536 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 SUPT20HL2P0C7V6 817 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 TECP42680 631 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 NUCB2P80303 420 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 SMAP1Q8IYB5 467 aaPredicted RBP24.97■■□□□ 1.59
SHMT1-203ENST00000354098 MTG1Q9BT17 334 aaPredicted RBP24.97■■□□□ 1.59
SHMT1-203ENST00000354098 PCDHA10Q9Y5I2 948 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 WDR64B1ANS9 1081 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 CHMP4BP1P59074 171 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 PTPAQ15257 358 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 MIER3Q7Z3K6 550 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 CCDC60Q8IWA6 550 aaPredicted RBP24.97■■□□□ 1.59
SHMT1-203ENST00000354098 VTI1AQ96AJ9 217 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 GLT1D1Q96MS3 346 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 C11orf49Q9H6J7 331 aa24.97■■□□□ 1.59
SHMT1-203ENST00000354098 MKI67P46013 3256 aaKnown RBP24.96■■□□□ 1.59
SHMT1-203ENST00000354098 IGKV6D-21A0A0A0MT36 114 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 LAD1O00515 517 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 DNM1Q05193 864 aaKnown RBP24.96■■□□□ 1.59
SHMT1-203ENST00000354098 NCAPH2Q6IBW4 605 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 SWSAP1Q6NVH7 229 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 MIS18BP1Q6P0N0 1132 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 NECAB2Q7Z6G3 386 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 ZNF396Q96N95 335 aaPredicted RBP24.96■■□□□ 1.59
SHMT1-203ENST00000354098 STARD7Q9NQZ5 370 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 GRIN2DO15399 1336 aa24.96■■□□□ 1.59
SHMT1-203ENST00000354098 POTEMA6NI47 508 aa24.95■■□□□ 1.58
SHMT1-203ENST00000354098 LGR5O75473 907 aa24.95■■□□□ 1.58
SHMT1-203ENST00000354098 F2P00734 622 aa24.95■■□□□ 1.58
SHMT1-203ENST00000354098 SFNP31947 248 aa24.95■■□□□ 1.58
SHMT1-203ENST00000354098 JAK3P52333 1124 aa24.95■■□□□ 1.58
SHMT1-203ENST00000354098 H3BRB1 525 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 BACH1O14867 736 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 CABYRO75952 493 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 PSAPP07602 524 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 PRPHP41219 470 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 ATN1P54259 1190 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-203ENST00000354098 GLG1Q92896 1179 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 TUT1Q9H6E5 874 aaKnown RBP24.94■■□□□ 1.58
SHMT1-203ENST00000354098 CEP131Q9UPN4 1083 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 MYH15Q9Y2K3 1946 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 EMSYQ7Z589 1322 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 STAT5BP51692 787 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 DTHD1Q6ZMT9 781 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 AZI2Q9H6S1 392 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 ZNF302Q9NR11 478 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 GABBR1Q9UBS5 961 aa24.94■■□□□ 1.58
SHMT1-203ENST00000354098 HAS3O00219 553 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 CAPN15O75808 1086 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 BMP15O95972 392 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 MARK3P27448 753 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 MARCKSP29966 332 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-203ENST00000354098 NASPP49321 788 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-203ENST00000354098 PSEN2P49810 448 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 FXR2P51116 673 aaKnown RBP eCLIP24.93■■□□□ 1.58
SHMT1-203ENST00000354098 MFSD10Q14728 455 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 UGCGQ16739 394 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 KIAA0753Q2KHM9 967 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms