RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 KIF13BQ9NQT8 1826 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 PDE2AO00408 941 aaPredicted RBP24.44■■□□□ 1.5
UPF3A-201ENST00000351487 RPA1P27694 616 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 CIITAP33076 1130 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 ITIH3Q06033 890 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 PRR16Q569H4 304 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 BTNL9Q6UXG8 535 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 NELFCDQ8IXH7 590 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 FAM20AQ96MK3 541 aa24.44■■□□□ 1.5
UPF3A-201ENST00000351487 ENTPD3O75355 529 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 GDF11O95390 407 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 CACNB1Q02641 598 aaPredicted RBP24.43■■□□□ 1.5
UPF3A-201ENST00000351487 ALS2CR12Q96Q35 445 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 UIMC1Q96RL1 719 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 MLXIPQ9HAP2 919 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 SYNPO2Q9UMS6 1093 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.43■■□□□ 1.5
UPF3A-201ENST00000351487 SPDYE3A6NKU9 549 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 ZNF185O15231 689 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 FAM83BQ5T0W9 1011 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 CAGE1Q8TC20 777 aa24.43■■□□□ 1.5
UPF3A-201ENST00000351487 SPATA31C1P0DKV0 1188 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 MAGEA1P43355 309 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 SLC9C1Q4G0N8 1177 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 CREG2Q8IUH2 290 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 SYT2Q8N9I0 419 aaPredicted RBP24.42■■□□□ 1.5
UPF3A-201ENST00000351487 FAM86B1E9PN63 330 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 MOCS3O95396 460 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 SERPING1P05155 500 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 KRT18P05783 430 aaKnown RBP24.42■■□□□ 1.5
UPF3A-201ENST00000351487 FAM86B2P0C5J1 330 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 MAP9Q49MG5 647 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 LSM14BQ9BX40 385 aaKnown RBP24.42■■□□□ 1.5
UPF3A-201ENST00000351487 VIPAS39Q9H9C1 493 aa24.42■■□□□ 1.5
UPF3A-201ENST00000351487 CCDC66A2RUB6 948 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 TLR2O60603 784 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 BMP3P12645 472 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 GIT2Q14161 759 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 SFMBT2Q5VUG0 894 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 OPLAHO14841 1288 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 GFPT1Q06210 699 aaPredicted RBP24.41■■□□□ 1.5
UPF3A-201ENST00000351487 USH1GQ495M9 461 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 TEX2Q8IWB9 1127 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 NLRC4Q9NPP4 1024 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 DNM3Q9UQ16 869 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 TRAF3IP3Q9Y228 551 aa24.41■■□□□ 1.5
UPF3A-201ENST00000351487 PSME4Q14997 1843 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 CYP3A4P08684 503 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 TCP1P17987 556 aaKnown RBP24.4■■□□□ 1.5
UPF3A-201ENST00000351487 SNAP25P60880 206 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 RAD51AP2Q09MP3 1159 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 ADAM9Q13443 819 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 EPM2AIP1Q7L775 607 aaPredicted RBP24.4■■□□□ 1.5
UPF3A-201ENST00000351487 RNF10Q8N5U6 811 aaKnown RBP24.4■■□□□ 1.5
UPF3A-201ENST00000351487 RNF216Q9NWF9 866 aaPredicted RBP24.4■■□□□ 1.5
UPF3A-201ENST00000351487 VAV3Q9UKW4 847 aa24.4■■□□□ 1.5
UPF3A-201ENST00000351487 H0YIN7 160 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 PIK3CDO00329 1044 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 CETN3O15182 167 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 PSMC6P62333 389 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 TDRD12Q587J7 1177 aaKnown RBP24.39■■□□□ 1.5
UPF3A-201ENST00000351487 RBM26Q5T8P6 1007 aaKnown RBP24.39■■□□□ 1.5
UPF3A-201ENST00000351487 MMGT1Q8N4V1 131 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 EXOC4Q96A65 974 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 ACBD3Q9H3P7 528 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 PSD3Q9NYI0 1048 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 HYOU1Q9Y4L1 999 aa24.39■■□□□ 1.5
UPF3A-201ENST00000351487 LRRIQ3A6PVS8 624 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-201ENST00000351487 GH2P01242 217 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 CASP5P51878 434 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 POLR2FP61218 127 aaKnown RBP24.39■■□□□ 1.49
UPF3A-201ENST00000351487 JAG1P78504 1218 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 IKQ13123 557 aaPredicted RBP24.39■■□□□ 1.49
UPF3A-201ENST00000351487 KCTD17Q8N5Z5 321 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 REEP2Q9BRK0 252 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 TDRD3Q9H7E2 651 aaKnown RBP24.39■■□□□ 1.49
UPF3A-201ENST00000351487 SALL4Q9UJQ4 1053 aa24.39■■□□□ 1.49
UPF3A-201ENST00000351487 MSH4O15457 936 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 PABPC4Q13310 644 aaKnown RBP eCLIP24.38■■□□□ 1.491e-6■■■■■ 56.2
UPF3A-201ENST00000351487 TAF3Q5VWG9 929 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 RUBCNQ92622 972 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 OSBPL9Q96SU4 736 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 GANQ9H2C0 597 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 ADAM21Q9UKJ8 722 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 NR2F2P24468 414 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 AIPL1Q9NZN9 384 aa24.38■■□□□ 1.49
UPF3A-201ENST00000351487 SMCHD1A6NHR9 2005 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 ERICH4A6NGS2 130 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 KNOP1Q1ED39 458 aaKnown RBP24.37■■□□□ 1.49
UPF3A-201ENST00000351487 BMT2Q1RMZ1 405 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 MSL1Q68DK7 614 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 FRMD5Q7Z6J6 570 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 SFR1Q86XK3 245 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 COG1Q8WTW3 980 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 NOX5Q96PH1 765 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 POLR3CQ9BUI4 534 aaPredicted RBP24.37■■□□□ 1.49
UPF3A-201ENST00000351487 ZHX3Q9H4I2 956 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 MED4Q9NPJ6 270 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 LUC7LQ9NQ29 371 aaKnown RBP24.37■■□□□ 1.49
UPF3A-201ENST00000351487 RASSF7Q02833 373 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms