RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 MTUS1Q9ULD2 1270 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 TSC2P49815 1807 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 PSME4Q14997 1843 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 A0A1W2PQ67 120 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 TEX33O43247 280 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 UBTFL6P0CB48 400 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 MKRN3Q13064 507 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 NUDCD3Q8IVD9 361 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 KNTC1P50748 2209 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 GOLGA8SH3BPF8 625 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 GOLGA8MH3BSY2 632 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 IFIT3O14879 490 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 ANKRD13DQ6ZTN6 518 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 TTC30BQ8N4P2 665 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 EMC3Q9P0I2 261 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 AKAP2Q9Y2D5 859 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 NCKAP5O14513 1909 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 KAZNQ674X7 775 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 DDX42Q86XP3 938 aaKnown RBP eCLIP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 IWS1Q96ST2 819 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 TMEM131Q92545 1883 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 U2AF1L4Q8WU68 220 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 KLHL42Q9P2K6 505 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SPATA31D1Q6ZQQ2 1576 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SYNDIG1LA6NDD5 238 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 FSBPO95073 299 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 TMPOP42166 694 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SKOR1P84550 965 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PRKAB2O43741 272 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 EN1Q05925 392 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 RFWD2Q8NHY2 731 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 MYO1CO00159 1063 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 INPP5BP32019 993 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 MTIF2P46199 727 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 DNAJB7Q7Z6W7 309 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 KIDINS220Q9ULH0 1771 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SMIM22K7EJ46 135 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 FBXO41Q8TF61 875 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 CYTH2Q99418 400 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 IPO5O00410 1097 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF202O95125 648 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 STAMBPO95630 424 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC93Q567U6 631 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 CC2D1AQ6P1N0 951 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 LRRC45Q96CN5 670 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 FAM84AQ96KN4 292 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 BICC1Q9H694 974 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 C17orf75Q9HAS0 396 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 CUEDC1Q9NWM3 386 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 NUP153P49790 1475 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 KLHL33A6NCF5 533 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 XBP1P17861 261 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PLA2G4DQ86XP0 818 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 FAM133AQ8N9E0 248 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PMM1Q92871 262 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 MOSPD1Q9UJG1 213 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 TBCAO75347 108 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 MRPS35P82673 323 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ZBTB41Q5SVQ8 909 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PPP1R21Q6ZMI0 780 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 DTX3Q8N9I9 347 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 HEY1Q9Y5J3 304 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 POLR2AP24928 1970 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 MOCS3O95396 460 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 LARGE1O95461 756 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PPP1R7Q15435 360 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ME3Q16798 604 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ZSCAN25Q6NSZ9 544 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 KIF6Q6ZMV9 814 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 IQCA1Q86XH1 822 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PHF12Q96QT6 1004 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 GLI2P10070 1586 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 DIAPH2O60879 1101 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 TNFRSF8P28908 595 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 HNRNPH1P31943 449 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 KCNF1Q9H3M0 494 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ATP6V0A4Q9HBG4 840 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 USP42Q9H9J4 1324 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 EIF2AQ9BY44 585 aaKnown RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 BTBD19C9JJ37 291 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 CROCCP3Q8IVE0 287 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 SGSM3Q96HU1 749 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 TLK1Q9UKI8 766 aa3.84□□□□□ -1.79
SYNE1-201ENST00000341594 ZMYND8Q9ULU4 1186 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-201ENST00000341594 PAX3P23760 479 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ADD1P35611 737 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 BRF1Q92994 677 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 UBR2Q8IWV8 1755 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 FAM86C2PA6NEL3 165 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ARL1P40616 181 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 DRG2P55039 364 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 GET4Q7L5D6 327 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 NME9Q86XW9 330 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 MRPL50Q8N5N7 158 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 RBBP8NLQ8NC74 664 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 DNAJB4Q9UDY4 337 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ANO9A1A5B4 782 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ANKRD33BA6NCL7 494 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 STAMBPL1Q96FJ0 436 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms