RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 MYBL2P10244 700 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KRT20P35900 424 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TTC22Q5TAA0 569 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 FRA10AC1Q70Z53 315 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM57Q8N5G2 664 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CCT6BQ92526 530 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MS4A14Q96JA4 679 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM55Q9BYV6 548 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ATP11BQ9Y2G3 1177 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 PCDHB7Q9Y5E2 793 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 HEMK1Q9Y5R4 338 aaPredicted RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ZMYM6O95789 1325 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CCL15-CCL14A0A0B4J2E2 113 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 A0A0G2JLW4 131 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SH3BP5O60239 455 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TTC4O95801 387 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 C1QTNF8P60827 252 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SP4Q02446 784 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ELOAQ14241 798 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CCL15Q16663 113 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SLFNL1Q499Z3 407 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 IFIT1BQ5T764 474 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGEF18Q6ZSZ5 1173 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SKAP1Q86WV1 359 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 NSUN7Q8NE18 718 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TSR2Q969E8 191 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 VPS50Q96JG6 964 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 FAM124BQ9H5Z6 455 aaPredicted RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ATP6V0A4Q9HBG4 840 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MBD2Q9UBB5 411 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SYNPO2Q9UMS6 1093 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 FAM169AQ9Y6X4 670 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 WDR19Q8NEZ3 1342 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ASNSP08243 561 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CDH2P19022 906 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CYP7A1P22680 504 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PTPREP23469 700 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TRAPPC10P48553 1259 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TNFAIP2Q03169 654 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GABPAQ06546 454 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARID5BQ14865 1188 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 KIZQ2M2Z5 673 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SGO2Q562F6 1265 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TCERG1LQ5VWI1 586 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ATP6V0A1Q93050 837 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NEDD4LQ96PU5 975 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MKNK1Q9BUB5 465 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PHACTR1Q9C0D0 580 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 STOML1Q9UBI4 398 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 UBA2Q9UBT2 640 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SPATA31A3Q5VYP0 1347 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GNRH1P01148 92 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CAPN1P07384 714 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CIITAP33076 1130 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 VEPH1Q14D04 833 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZYXQ15942 572 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TDRD12Q587J7 1177 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CHST3Q7LGC8 479 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PRUNE1Q86TP1 453 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 INO80BQ9C086 356 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 UPF3AQ9H1J1 476 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 STN1Q9H668 368 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SNRKQ9NRH2 765 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SLC12A6Q9UHW9 1150 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM247A6NEH6 219 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 C19orf81C9J6K1 198 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 APOA1P02647 267 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 HSPA1AP0DMV8 641 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 HSPA1BP0DMV9 641 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MYCLP12524 364 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TTKP33981 857 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 LMAN1P49257 510 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 DMPKQ09013 629 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PPP2R5CQ13362 524 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RC3H1Q5TC82 1133 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 THUMPD2Q9BTF0 503 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GDPD2Q9HCC8 539 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CNOT7Q9UIV1 285 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MTHFSDQ2M296 383 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PPP4R3CPQ6ZMV5 832 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 BRINP3Q76B58 766 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NDUFAF2Q8N183 169 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 VPS37AQ8NEZ2 397 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TTLL11Q8NHH1 800 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NCOA7Q8NI08 942 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SPACA7Q96KW9 195 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TM6SF1Q9BZW5 370 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GMEB2Q9UKD1 530 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PAIP2BQ9ULR5 123 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZNRF3Q9ULT6 936 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NUB1Q9Y5A7 615 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 KNL1Q8NG31 2342 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF609O15014 1411 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGEF9O43307 516 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZFXP17010 805 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RPS8P62241 208 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 Q3C1V9 767 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 UBE3BQ7Z3V4 1068 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms