RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 USHBP1Q8N6Y0 703 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 RBM46Q8TBY0 533 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 DHTKD1Q96HY7 919 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 TRAF3IP3Q9Y228 551 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 MYBBP1AQ9BQG0 1328 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC189A1A4V9 331 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ARL5CA6NH57 179 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KRT38O76015 456 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 MAPKAPK2P49137 400 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ACTN3Q08043 901 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 SSRP1Q08945 709 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CUL1Q13616 776 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 TP53BP2Q13625 1128 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PSMD5Q16401 504 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 BBS9Q3SYG4 887 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PALB2Q86YC2 1186 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC197Q8NCU1 140 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PMM1Q92871 262 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KLHL32Q96NJ5 620 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PHB2Q99623 299 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 LBHD1Q9BQE6 289 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 LRRC40Q9H9A6 602 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PCDH18Q9HCL0 1135 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 UBN1Q9NPG3 1134 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PRELID1Q9Y255 219 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 XRCC5P13010 732 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 SCG2P13521 617 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 NUTM2AQ8IVF1 878 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 TERB1Q8NA31 727 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 DNAJC7Q99615 494 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CINPQ9BW66 212 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CARD6Q9BX69 1037 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ANO3Q9BYT9 981 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ECT2Q9H8V3 914 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ZBTB40Q9NUA8 1239 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ATP5HO75947 161 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 EIF2S1P05198 315 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 MAPK4P31152 587 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 BATFQ16520 125 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KRT79Q5XKE5 535 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ZBTB8BQ8NAP8 495 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 DDX17Q92841 729 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KIAA1143Q96AT1 154 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CDCA7LQ96GN5 454 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 FTOQ9C0B1 505 aaKnown RBP eCLIP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 COPG2Q9UBF2 871 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 RABL2AQ9UBK7 228 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 GABBR1Q9UBS5 961 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 HIF3AQ9Y2N7 669 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 SLC12A7Q9Y666 1083 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 SAGE2PA6NJ88 616 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 BTBD19C9JJ37 291 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SUN1O94901 812 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SLC5A1P13866 664 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TFAP4Q01664 338 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 MTMR3Q13615 1198 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TTMPQ5BVD1 217 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 ERMARDQ5T6L9 678 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 PACS1Q6VY07 963 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 RAB11FIP2Q7L804 512 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 CKAP2Q8WWK9 683 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 KIF15Q9NS87 1388 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 STX10O60499 249 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TOM1L1O75674 476 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 HSPA8P11142 646 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 FDPSP14324 419 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TUFMP49411 452 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 IGSF22Q8N9C0 903 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 RIN3Q8TB24 985 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 RSAD2Q8WXG1 361 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 HINFPQ9BQA5 517 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 HDHD2Q9H0R4 259 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 ARMT1Q9H993 441 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 STARD7Q9NQZ5 370 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TBC1D4O60343 1298 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TADA2AO75478 443 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 FYNP06241 537 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 RB1P06400 928 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SRP54P61011 504 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 TTC23Q5W5X9 447 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 HAUS3Q68CZ6 603 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SCARA3Q6AZY7 606 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 LRRC6Q86X45 466 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 MAIP1Q8WWC4 291 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 EXT2Q93063 718 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 THOC1Q96FV9 657 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 ATP6V1G3Q96LB4 118 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SERPINI1Q99574 410 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 MKNK2Q9HBH9 465 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 PCMTD2Q9NV79 361 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 ARAP1Q96P48 1450 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 CAND2O75155 1236 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SNAPC5O75971 98 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 IL1R1P14778 569 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 PMS2P54278 862 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 EXOSC10Q01780 885 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 NFIL3Q16649 462 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 RELL1Q8IUW5 271 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 PHC3Q8NDX5 983 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC51Q96ER9 411 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms