RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 H0Y3Z8 333 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 MAGOHP61326 146 aaKnown RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 POLA2Q14181 598 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 FAM98CQ17RN3 349 aaKnown RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 ARHGEF16Q5VV41 709 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 TRIML2Q8N7C3 387 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 OSBP2Q969R2 916 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 CYTH2Q99418 400 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 CDK12Q9NYV4 1490 aaPredicted RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 IQANK1A0A1B0GTG1 560 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 CYP2C19P33261 490 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 LIFRP42702 1097 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 BASP1P80723 227 aaKnown RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 DEUP1Q05D60 604 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 DYNC1I2Q13409 638 aaKnown RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 LLGL1Q15334 1064 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 GYG2O15488 501 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 ACCSQ96QU6 501 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 UBE2TQ9NPD8 197 aaPredicted RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 ADGRG1Q9Y653 693 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 NLRP1Q9C000 1473 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 IPO5O00410 1097 aaKnown RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 CHRNDQ07001 517 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 ASPRV1Q53RT3 343 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 GLG1Q92896 1179 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 CCDC68Q9H2F9 335 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 DISC1Q9NRI5 854 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 hCG_1984214I3L0E3 225 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 CENPUQ71F23 418 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 RHOT2Q8IXI1 618 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 ZNF713Q8N859 430 aaPredicted RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 CACYBPQ9HB71 228 aaKnown RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 PREX2Q70Z35 1606 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 PRPSAP1Q14558 356 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 RSPH3Q86UC2 560 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 TRIM55Q9BYV6 548 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 POLD1P28340 1107 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 RWDD2BP57060 319 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 IL1RL1Q01638 556 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 ART3Q13508 389 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 BRDTQ58F21 947 aaPredicted RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 NACA2Q9H009 215 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 PUS7LQ9H0K6 701 aaKnown RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 GREM2Q9H772 168 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 KLC4Q9NSK0 619 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 IPO11Q9UI26 975 aaKnown RBP18.71■□□□□ 0.59
SYNPO-201ENST00000307662 PLA2R1Q13018 1463 aa18.71■□□□□ 0.59
SYNPO-201ENST00000307662 NCF2P19878 526 aaPredicted RBP18.7■□□□□ 0.58
SYNPO-201ENST00000307662 BTDP43251 543 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ZNF579Q8NAF0 562 aaKnown RBP18.7■□□□□ 0.58
SYNPO-201ENST00000307662 MED10Q9BTT4 135 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ORC6Q9Y5N6 252 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 CFAP73A6NFT4 308 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 TTI1O43156 1089 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 CHGBP05060 677 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 PTPREP23469 700 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ATP6V1G3Q96LB4 118 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 PFDN6O15212 129 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 PPP4R3CPQ6ZMV5 832 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 SNX24Q9Y343 169 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ZDHHC9Q9Y397 364 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ROBO2Q9HCK4 1378 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 GNGT2O14610 69 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 NRBF2Q96F24 287 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 ZSWIM5Q9P217 1185 aa18.7■□□□□ 0.58
SYNPO-201ENST00000307662 HNRNPDLO14979 420 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 EEF1DP29692 281 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 SLFN13Q68D06 897 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 RAB44Q7Z6P3 723 aaPredicted RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 COG1Q8WTW3 980 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 TMEM206Q9H813 350 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 GDAQ9Y2T3 454 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 A0A0G2JND7 137 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 PDHA1P08559 390 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 ACTN1P12814 892 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 OSBPL9Q96SU4 736 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 CEP72Q9P209 647 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 ANKFY1Q9P2R3 1169 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 TARSL2A2RTX5 802 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 EEF1B2P24534 225 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 MCF2L2Q86YR7 1114 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 PYROXD1Q8WU10 500 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 GRID2IPA4D2P6 1211 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 DYNLT1P63172 113 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 GTF2IP78347 998 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 ITKQ08881 620 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 MUM1L1Q5H9M0 696 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 DARS2Q6PI48 645 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 CEP70Q8NHQ1 597 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 NCAPGQ9BPX3 1015 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 ZFP69BQ9UJL9 534 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 KIF1BO60333 1816 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 CASP2P42575 452 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 MYO1EQ12965 1108 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 GPATCH4Q5T3I0 446 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 PRPF31Q8WWY3 499 aaKnown RBP18.69■□□□□ 0.58
SYNPO-201ENST00000307662 DYDC2Q96IM9 177 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 AMNQ9BXJ7 453 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 DNAJC17Q9NVM6 304 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms