RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TCEAL5Q5H9L2 206 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 PCNX4Q63HM2 1172 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 NLRX1Q86UT6 975 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 LMBR1Q8WVP7 490 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 CDHR1Q96JP9 859 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 MAP3K14Q99558 947 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 UPF3BQ9BZI7 483 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 C5orf67F2Z3F1 127 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 H3BQ06 376 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 DCXO43602 365 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 CYTH3O43739 400 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 CTNNB1P35222 781 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 SEMA3FQ13275 785 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 SLC35G1Q2M3R5 365 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 EP400NLQ6ZTU2 488 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 NCOA7Q8NI08 942 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 SMARCC2Q8TAQ2 1214 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 ZFP91Q96JP5 570 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 SPZ1Q9BXG8 430 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 KCNH6Q9H252 994 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 DOCK5Q9H7D0 1870 aa17.03■□□□□ 0.32
CCDC88B-201ENST00000301897 PIK3CDO00329 1044 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 SMARCA1P28370 1054 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 KIF5BP33176 963 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 BMPR1AP36894 532 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 UTP14CQ5TAP6 766 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 TRIM50Q86XT4 487 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 ADHFE1Q8IWW8 467 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 RRP36Q96EU6 259 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 POP1Q99575 1024 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 LZTS2Q9BRK4 669 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 BCAS3Q9H6U6 928 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 RTEL1Q9NZ71 1219 aa17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 SEC63Q9UGP8 760 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-201ENST00000301897 TTC3P53804 2025 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 CYP21A2P08686 494 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 ZP2Q05996 745 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 CTCFLQ8NI51 663 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 CLP1Q92989 425 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 GPRASP2Q96D09 838 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 UIMC1Q96RL1 719 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 PLVAPQ9BX97 442 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 EHMT1Q9H9B1 1298 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 CLDND1Q9NY35 253 aa17.01■□□□□ 0.31
CCDC88B-201ENST00000301897 ADGRA3Q8IWK6 1321 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 POTEB3A0JP26 581 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 C19orf67A6NJJ6 358 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 CHRNA1P02708 482 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 GHRP10912 638 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 GNAQP50148 359 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 SP4Q02446 784 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 POTEBQ6S5H4 581 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 PPP2R3CQ969Q6 453 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 MTA3Q9BTC8 594 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 OSBPL7Q9BZF2 842 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 IL25Q9H293 177 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 ERAP1Q9NZ08 941 aa17■□□□□ 0.31
CCDC88B-201ENST00000301897 TRIOO75962 3097 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 E7EWF7 191 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 DDAH1O94760 285 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 TCF7P36402 384 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 PPFIA1Q13136 1202 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 CTC1Q2NKJ3 1217 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 USP17L6PQ6QN14 398 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 SEPT1Q8WYJ6 367 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 TUBE1Q9UJT0 475 aa16.99■□□□□ 0.31
CCDC88B-201ENST00000301897 MBLAC1A4D2B0 266 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 RRN3P2A6NIE6 340 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 MEIS2O14770 477 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 MAFGO15525 162 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 MGAT3Q09327 533 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 BTG3Q14201 252 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 LPIN1Q14693 890 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 SMAD2Q15796 467 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 NAALADL2Q58DX5 795 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 TTC22Q5TAA0 569 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 TSHZ1Q6ZSZ6 1077 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 FAM43BQ6ZT52 329 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 TMTC2Q8N394 836 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 IGDCC4Q8TDY8 1250 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 PIBF1Q8WXW3 757 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 FTHL17Q9BXU8 183 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 SMARCAD1Q9H4L7 1026 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 RC3H2Q9HBD1 1191 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 SENP2Q9HC62 589 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 SQORQ9Y6N5 450 aa16.98■□□□□ 0.31
CCDC88B-201ENST00000301897 C5orf42Q9H799 3197 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 ENPP3O14638 875 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 KCNA2P16389 499 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 GRIK4Q16099 956 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 FBXO47Q5MNV8 452 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 CASC1Q6TDU7 716 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 RUFY4Q6ZNE9 571 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 ZNF654Q8IZM8 581 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 GLG1Q92896 1179 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 P2RX5Q93086 422 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 ZNF689Q96CS4 500 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 PSTPIP2Q9H939 334 aa16.97■□□□□ 0.31
CCDC88B-201ENST00000301897 ZNF318Q5VUA4 2279 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms