RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 EIF2AK1Q9BQI3 630 aaKnown RBP26.49■■□□□ 1.83
TRIM54-201ENST00000296098 EDEM3Q9BZQ6 932 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 MYO6Q9UM54 1294 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 SPA17Q15506 151 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 MIGA2Q7L4E1 593 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 WDR18Q9BV38 432 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 EHMT1Q9H9B1 1298 aa26.49■■□□□ 1.83
TRIM54-201ENST00000296098 MRPL11Q9Y3B7 192 aaKnown RBP26.49■■□□□ 1.83
TRIM54-201ENST00000296098 LRRC53A6NM62 1247 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 CAP2P40123 477 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 VAV2P52735 878 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 RRAGAQ7L523 313 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 SFR1Q86XK3 245 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 TRIM59Q8IWR1 403 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 BAP1Q92560 729 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 TSGA10Q9BZW7 698 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 ARHGAP20Q9P2F6 1191 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 RBBP6Q7Z6E9 1792 aaKnown RBP26.48■■□□□ 1.83
TRIM54-201ENST00000296098 RCCD1A6NED2 376 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 ZRANB2O95218 330 aaKnown RBP eCLIP26.48■■□□□ 1.83
TRIM54-201ENST00000296098 PLEKP08567 350 aaPredicted RBP26.48■■□□□ 1.83
TRIM54-201ENST00000296098 TUBB4BP68371 445 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 ARHGAP27Q6ZUM4 889 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 KCTD17Q8N5Z5 321 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 CCDC155Q8N6L0 562 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 SMCR8Q8TEV9 937 aaPredicted RBP26.48■■□□□ 1.83
TRIM54-201ENST00000296098 TBC1D5Q92609 795 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 PARD6BQ9BYG5 372 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 LACRTQ9GZZ8 138 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 RABGAP1Q9Y3P9 1069 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 FHOD1Q9Y613 1164 aa26.48■■□□□ 1.83
TRIM54-201ENST00000296098 EML1O00423 815 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 CASP5P51878 434 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 CYP27A1Q02318 531 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 PDXDC1Q6P996 788 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 POTEAQ6S8J7 498 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 CACNA2D4Q7Z3S7 1137 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 BHMT2Q9H2M3 363 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 RGS17Q9UGC6 210 aaPredicted RBP26.47■■□□□ 1.83
TRIM54-201ENST00000296098 FEM1BQ9UK73 627 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 UTP18Q9Y5J1 556 aaKnown RBP eCLIP26.47■■□□□ 1.83
TRIM54-201ENST00000296098 ATAD5Q96QE3 1844 aa26.47■■□□□ 1.83
TRIM54-201ENST00000296098 EYA4O95677 639 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 KCNMA1Q12791 1236 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 CTAGE15A4D2H0 777 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 CTAGE8P0CG41 777 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 PNMA6AP0CW24 399 aaPredicted RBP26.46■■□□□ 1.83
TRIM54-201ENST00000296098 KIF11P52732 1056 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 KIF5AQ12840 1032 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 ADAM9Q13443 819 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 LRCH2Q5VUJ6 765 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 TRAPPC11Q7Z392 1133 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 CTAGE6Q86UF2 777 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 CTAGE4Q8IX94 777 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 ZBED3Q96IU2 234 aaPredicted RBP26.46■■□□□ 1.83
TRIM54-201ENST00000296098 PURBQ96QR8 312 aaKnown RBP26.46■■□□□ 1.83
TRIM54-201ENST00000296098 DEF6Q9H4E7 631 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 CEP72Q9P209 647 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 FAM184BQ9ULE4 1060 aa26.46■■□□□ 1.83
TRIM54-201ENST00000296098 POTEB2H3BUK9 544 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 ZNF263O14978 683 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 CETN3O15182 167 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 TBCAO75347 108 aaKnown RBP26.45■■□□□ 1.82
TRIM54-201ENST00000296098 TFRCP02786 760 aaKnown RBP26.45■■□□□ 1.82
TRIM54-201ENST00000296098 EIF4A3P38919 411 aaKnown RBP26.45■■□□□ 1.82
TRIM54-201ENST00000296098 EPM2AIP1Q7L775 607 aaPredicted RBP26.45■■□□□ 1.82
TRIM54-201ENST00000296098 SLC5A5Q92911 643 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 RUSC1Q9BVN2 902 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 TUFT1Q9NNX1 390 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 RGL1Q9NZL6 768 aa26.45■■□□□ 1.82
TRIM54-201ENST00000296098 PSMD10O75832 226 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 PPP2R5CQ13362 524 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 CC2D1AQ6P1N0 951 aaPredicted RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 IFIH1Q9BYX4 1025 aaKnown RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 PRDM10Q9NQV6 1147 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 TRAF3IP3Q9Y228 551 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 SEC31AO94979 1220 aaKnown RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 LCA5LO95447 670 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 ASNSP08243 561 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 NR2F2P24468 414 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 KNOP1Q1ED39 458 aaKnown RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 SAMD1Q6SPF0 538 aaPredicted RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 OTOP1Q7RTM1 612 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 KRT26Q7Z3Y9 468 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 LSM14BQ9BX40 385 aaKnown RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 GLIS2Q9BZE0 524 aaPredicted RBP26.44■■□□□ 1.82
TRIM54-201ENST00000296098 PGAP2Q9UHJ9 254 aa26.44■■□□□ 1.82
TRIM54-201ENST00000296098 ENC1O14682 589 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 ATP1A1P05023 1023 aaKnown RBP26.43■■□□□ 1.82
TRIM54-201ENST00000296098 CXCL9Q07325 125 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 HSD17B14Q9BPX1 270 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 NUCKS1Q9H1E3 243 aaKnown RBP26.43■■□□□ 1.82
TRIM54-201ENST00000296098 FBXO28Q9NVF7 368 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 CHMP2AO43633 222 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 USO1O60763 962 aaKnown RBP26.43■■□□□ 1.82
TRIM54-201ENST00000296098 UBXN2AP68543 259 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 PAPD7Q5XG87 772 aaKnown RBP26.43■■□□□ 1.82
TRIM54-201ENST00000296098 LDHDQ86WU2 507 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 SECISBP2LQ93073 1101 aaKnown RBP26.43■■□□□ 1.82
TRIM54-201ENST00000296098 ANKZF1Q9H8Y5 726 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms