RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SAMD1Q6SPF0 538 aaPredicted RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 VAV3Q9UKW4 847 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 RAB21Q9UL25 225 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 TBX3O15119 743 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 ZNF185O15231 689 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 AKR1B10O60218 316 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 SFR1Q86XK3 245 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 ERMNQ8TAM6 284 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 SECISBP2LQ93073 1101 aaKnown RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 SUGCTQ9HAC7 445 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 ZBTB12Q9Y330 459 aaPredicted RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 CAPN6Q9Y6Q1 641 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 RSPH10B2B2RC85 870 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 EML1O00423 815 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 ATP8B1O43520 1251 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 NOL4O94818 638 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 RSPH10BP0C881 870 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 ZNF76P36508 570 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 STAT2P52630 851 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 ZYXQ15942 572 aaKnown RBP22.17■■□□□ 1.14
VPS53-201ENST00000291074 CCDC174Q6PII3 467 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 TRIM59Q8IWR1 403 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 CEP63Q96MT8 703 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 LSM14BQ9BX40 385 aaKnown RBP22.17■■□□□ 1.14
VPS53-201ENST00000291074 PDGFDQ9GZP0 370 aaPredicted RBP22.17■■□□□ 1.14
VPS53-201ENST00000291074 RGL1Q9NZL6 768 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 DNM3Q9UQ16 869 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 CFBP00751 764 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 UBXN2AP68543 259 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 ZFP91Q96JP5 570 aaPredicted RBP22.17■■□□□ 1.14
VPS53-201ENST00000291074 TMOD2Q9NZR1 351 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 PITPNM2Q9BZ72 1349 aa22.17■■□□□ 1.14
VPS53-201ENST00000291074 COL2A1P02458 1487 aaPredicted RBP22.17■■□□□ 1.14
VPS53-201ENST00000291074 CIITAP33076 1130 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 ADAM9Q13443 819 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 EZH2Q15910 746 aaKnown RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 SLC15A2Q16348 729 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 SYT2Q8N9I0 419 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 DRC1Q96MC2 740 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 ABCB6Q9NP58 842 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.16■■□□□ 1.14
VPS53-201ENST00000291074 COL4A5P29400 1685 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 POTEB2H3BUK9 544 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 POLR3GO15318 223 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 GFPT1Q06210 699 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 BEND6Q5SZJ8 279 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 ZNF771Q7L3S4 317 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 FAM20AQ96MK3 541 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 BHMT2Q9H2M3 363 aa22.16■■□□□ 1.14
VPS53-201ENST00000291074 ZNF70Q9UC06 446 aaPredicted RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 HERC5Q9UII4 1024 aaKnown RBP22.16■■□□□ 1.14
VPS53-201ENST00000291074 SLC26A4O43511 780 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 MOCS3O95396 460 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 MYBP10242 640 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 MCTP2Q6DN12 878 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 RSBN1LQ6PCB5 846 aaPredicted RBP22.15■■□□□ 1.14
VPS53-201ENST00000291074 SUPT20HQ8NEM7 779 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 WDR18Q9BV38 432 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 RUSC1Q9BVN2 902 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 SH2D4AQ9H788 454 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 ARHGEF10LQ9HCE6 1279 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 HOXD13P35453 343 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 POLR2FP61218 127 aaKnown RBP22.15■■□□□ 1.14
VPS53-201ENST00000291074 HGSNATQ68CP4 663 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 ANKRD13CQ8N6S4 541 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 UBXN6Q9BZV1 441 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 VEZTQ9HBM0 779 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 ZBTB21Q9ULJ3 1066 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 CNTNAP1P78357 1384 aa22.15■■□□□ 1.14
VPS53-201ENST00000291074 IGLV3-22A0A075B6J6 115 aa22.14■■□□□ 1.14
VPS53-201ENST00000291074 TLR2O60603 784 aa22.14■■□□□ 1.14
VPS53-201ENST00000291074 PRPF6O94906 941 aaKnown RBP22.14■■□□□ 1.14
VPS53-201ENST00000291074 NR2F2P24468 414 aa22.14■■□□□ 1.14
VPS53-201ENST00000291074 TDRD12Q587J7 1177 aaKnown RBP22.14■■□□□ 1.14
VPS53-201ENST00000291074 EIF2AK1Q9BQI3 630 aaKnown RBP22.14■■□□□ 1.14
VPS53-201ENST00000291074 TSGA10Q9BZW7 698 aa22.14■■□□□ 1.14
VPS53-201ENST00000291074 JADE2Q9NQC1 790 aa22.14■■□□□ 1.14
VPS53-201ENST00000291074 ZNF277Q9NRM2 450 aaPredicted RBP22.14■■□□□ 1.14
VPS53-201ENST00000291074 PDE2AO00408 941 aaPredicted RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 LCA5LO95447 670 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 SMC1AQ14683 1233 aaKnown RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 MIGA2Q7L4E1 593 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 ZCCHC17Q9NP64 241 aaKnown RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 CEP72Q9P209 647 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 TMX2Q9Y320 296 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 CHMP2AO43633 222 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 USO1O60763 962 aaKnown RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 OAS2P29728 719 aaKnown RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 EN1Q05925 392 aaPredicted RBP22.14■■□□□ 1.13
VPS53-201ENST00000291074 DLGAP5Q15398 846 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 SALL4Q9UJQ4 1053 aa22.14■■□□□ 1.13
VPS53-201ENST00000291074 ATAD5Q96QE3 1844 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 PIK3CDO00329 1044 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 GNA14O95837 355 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 POLD1P28340 1107 aa22.13■■□□□ 1.13
VPS53-201ENST00000291074 MARSP56192 900 aaKnown RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 CTTNQ14247 550 aaKnown RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 ASTE1Q2TB18 679 aaPredicted RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 ZC3H3Q8IXZ2 948 aaKnown RBP22.13■■□□□ 1.13
VPS53-201ENST00000291074 PIGOQ8TEQ8 1089 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms