RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 UIMC1Q96RL1 719 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 CDCA7Q9BWT1 371 aaPredicted RBP9.38□□□□□ -0.91
NIPBL-201ENST00000282516 CALN1Q9BXU9 219 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 PCDHA12Q9UN75 941 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 FAM170AA1A519 330 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 MEIS1O00470 390 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 PSMA3P25788 255 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 PODNQ7Z5L7 613 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 KBTBD3Q8NAB2 608 aa9.38□□□□□ -0.91
NIPBL-201ENST00000282516 GOLGA8MH3BSY2 632 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 IMPG1Q17R60 797 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ANO5Q75V66 913 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 C8orf58Q8NAV2 365 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 NFATC2IPQ8NCF5 419 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 STOML1Q9UBI4 398 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ORC4O43929 436 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 MAPKAPK5Q8IW41 473 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 GJA10Q969M2 543 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 CNOT6LQ96LI5 555 aaKnown RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SH3GL2Q99962 352 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SEL1LQ9UBV2 794 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 NR5A1Q13285 461 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 FAM26FQ5R3K3 315 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SLC7A3Q8WY07 619 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 EPB41L5Q9HCM4 733 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ABCF3Q9NUQ8 709 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SERTAD1Q9UHV2 236 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 KPNA7A9QM74 516 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 RECQLP46063 649 aaPredicted RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 COPB1P53618 953 aaKnown RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 PYROXD1Q8WU10 500 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 DSCC1Q9BVC3 393 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 MAGEB5Q9BZ81 275 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ATP11BQ9Y2G3 1177 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ATP10DQ9P241 1426 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 POLR3AO14802 1390 aaPredicted RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TNRQ92752 1358 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 H0YIN7 160 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 C4BPBP20851 252 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TECP42680 631 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 DYNLT1P63172 113 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TFAP4Q01664 338 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SLC9A5Q14940 896 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 PHACTR3Q96KR7 559 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SMYD3Q9H7B4 428 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 AKT3Q9Y243 479 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 A0A0G2JND7 137 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ARIH2O95376 493 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ANP32DO95626 131 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ARL4CP56559 192 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 AP1B1Q10567 949 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 PPP1R13BQ96KQ4 1090 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TBK1Q9UHD2 729 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SNX14Q9Y5W7 946 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SESN1Q9Y6P5 492 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 CDH2P19022 906 aaPredicted RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 PSMD7P51665 324 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 RBM6P78332 1123 aaKnown RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 GOLGA8FQ08AF8 430 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 GOLGA8DPQ0D2H9 430 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 AARS2Q5JTZ9 985 aaKnown RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 PAGR1Q9BTK6 254 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 FSD1LQ9BXM9 530 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ZNF532Q9HCE3 1301 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SGSM2O43147 1006 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 FOSP01100 380 aaPredicted RBP9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TCF3P15923 654 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 NR2F2P24468 414 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 HADHAP40939 763 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 TCP10Q12799 353 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 CATSPER3Q86XQ3 398 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 RAPGEF5Q92565 580 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 SAAL1Q96ER3 474 aa9.37□□□□□ -0.91
NIPBL-201ENST00000282516 ZNF500O60304 480 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-201ENST00000282516 PDE8AO60658 829 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 AFPP02771 609 aaKnown RBP9.36□□□□□ -0.91
NIPBL-201ENST00000282516 IMPDH2P12268 514 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 CMA1P23946 247 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 KCNA1Q09470 495 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 KIAA1755Q5JYT7 1200 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 LRRC8AQ8IWT6 810 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 CALR3Q96L12 384 aaKnown RBP9.36□□□□□ -0.91
NIPBL-201ENST00000282516 ACCSQ96QU6 501 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 TESK2Q96S53 571 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 SEPT9Q9UHD8 586 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-201ENST00000282516 NSUN2Q08J23 767 aaKnown RBP eCLIP9.36□□□□□ -0.91
NIPBL-201ENST00000282516 DLGAP5Q15398 846 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 KRT27Q7Z3Y8 459 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 TTC8Q8TAM2 541 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 NACC1Q96RE7 527 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 KDM4CQ9H3R0 1056 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 KIF1BO60333 1816 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 MMEP08473 750 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 CCNA1P78396 465 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 ANKS3Q6ZW76 656 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 ZNF280CQ8ND82 737 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 EDEM3Q9BZQ6 932 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 RNF103-CHMP3A0A140T963 221 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 GOLGA8SH3BPF8 625 aa9.36□□□□□ -0.91
NIPBL-201ENST00000282516 UBXN8O00124 270 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms