RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 SLIT3O75094 1523 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 RFX7Q2KHR2 1363 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 TRPM3Q9HCF6 1732 aaPredicted RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 MAGEA13PA6NCF6 341 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 POLR2DO15514 142 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 SART1O43290 800 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 NDUFB5O43674 189 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 SNX3O60493 162 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 ATP9AO75110 1047 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 COBLO75128 1261 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 SLC39A6Q13433 755 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 GIGYF2Q6Y7W6 1299 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 EXOC8Q8IYI6 725 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 STKLD1Q8NE28 680 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 SPATA20Q8TB22 786 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 DDX21Q9NR30 783 aaKnown RBP eCLIP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 NMRK1Q9NWW6 199 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 HYOU1Q9Y4L1 999 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 SPO11Q9Y5K1 396 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 CD2APQ9Y5K6 639 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 H0Y3Z8 333 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 TTC39AQ5SRH9 613 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 FITM2Q8N6M3 262 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 ENDOVQ8N8Q3 282 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 DDX50Q9BQ39 737 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 BOLA2Q9H3K6 86 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 ARHGEF38Q9NXL2 777 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 LUC7L2Q9Y383 392 aaKnown RBP10.04□□□□□ -0.8
PDGFC-201ENST00000274071 BCL9O00512 1426 aa10.04□□□□□ -0.8
PDGFC-201ENST00000274071 KIF1AQ12756 1690 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 ABCC12Q96J65 1359 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 NVLO15381 856 aaKnown RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 RAD21O60216 631 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 ECHS1P30084 290 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 HOXA10P31260 410 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 PSMD7P51665 324 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 USH1GQ495M9 461 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 CHST3Q7LGC8 479 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 LRRC43Q8N309 656 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 RSPH1Q8WYR4 309 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 UBAP1Q9NZ09 502 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 LIMA1Q9UHB6 759 aaKnown RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 CROTQ9UKG9 612 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 PNMA2Q9UL42 364 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 TMED5Q9Y3A6 229 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 STRCP1A6NGW2 1772 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 MST1RQ04912 1400 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 NCK2O43639 380 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 AKR1B10O60218 316 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 TACC1O75410 805 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 CHGBP05060 677 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 RASA1P20936 1047 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 HPCAP84074 193 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 TTLL12Q14166 644 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 THOC7Q6I9Y2 204 aaKnown RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 ZNF530Q6P9A1 599 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 AACSQ86V21 672 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 CCDC65Q8IXS2 484 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 SMYD4Q8IYR2 804 aaPredicted RBP10.03□□□□□ -0.8
PDGFC-201ENST00000274071 PFDN4Q9NQP4 134 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 TAB2Q9NYJ8 693 aa10.03□□□□□ -0.8
PDGFC-201ENST00000274071 MOCS3O95396 460 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 SMARCA1P28370 1054 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 COPB1P53618 953 aaKnown RBP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 GPSM2P81274 684 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 HLTFQ14527 1009 aaKnown RBP eCLIP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 TTF1Q15361 905 aaPredicted RBP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 DIXDC1Q155Q3 683 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 TSR1Q2NL82 804 aaKnown RBP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 AKAP4Q5JQC9 854 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 CYP4X1Q8N118 509 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 DEPTORQ8TB45 409 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 TLCD1Q96CP7 247 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 KRT12Q99456 494 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 PRMT1Q99873 361 aaKnown RBP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 NHEJ1Q9H9Q4 299 aaPredicted RBP10.02□□□□□ -0.8
PDGFC-201ENST00000274071 MLXIPQ9HAP2 919 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 ETNK1Q9HBU6 452 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 LRWD1Q9UFC0 647 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 USP20Q9Y2K6 914 aa10.02□□□□□ -0.8
PDGFC-201ENST00000274071 SH2B2O14492 632 aaPredicted RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 MAGEB3O15480 346 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 OAS1P00973 400 aaKnown RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 SKIP12755 728 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 CCNB1P14635 433 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 CYLC1P35663 651 aaPredicted RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 TRPC1P48995 793 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 CDK17Q00537 523 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 RASSF7Q02833 373 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 UBXN1Q04323 297 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 IMMTQ16891 758 aaKnown RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 KRT71Q3SY84 523 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 CFAP221Q4G0U5 840 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 LIN52Q52LA3 116 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 SPTY2D1Q68D10 685 aaPredicted RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 MPRIPQ6WCQ1 1025 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 DAAM2Q86T65 1068 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 UBLCP1Q8WVY7 318 aaPredicted RBP10.02□□□□□ -0.81
PDGFC-201ENST00000274071 NELFBQ8WX92 580 aa10.02□□□□□ -0.81
PDGFC-201ENST00000274071 LRRC45Q96CN5 670 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms