RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 SCYL3Q8IZE3 742 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 KCNV2Q8TDN2 545 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 PSD3Q9NYI0 1048 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SNX24Q9Y343 169 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SASH3O75995 380 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 NR1I3Q14994 352 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PTPAQ15257 358 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 CTAGE3PQ8IX95 158 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 TRIM4Q9C037 500 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ADD3Q9UEY8 706 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 LCMT1Q9UIC8 334 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 RABGAP1Q9Y3P9 1069 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 CLIC2O15247 247 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 OPHN1O60890 802 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 LUC7L3O95232 432 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 TFRCP02786 760 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 GCFC2P16383 781 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PSMC4P43686 418 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 TTLL12Q14166 644 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ALKBH5Q6P6C2 394 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 TMC4Q7Z404 712 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ARHGAP24Q8N264 748 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 THRAP3Q9Y2W1 955 aaKnown RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PXDNQ92626 1479 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ARHGAP42A6NI28 874 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 EIF3HO15372 352 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PPP1R37O75864 691 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 FGGP02679 453 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 LRRC63Q05C16 580 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 LRRC31Q6UY01 552 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 CCNI2Q6ZMN8 369 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ARMC9Q7Z3E5 817 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PROCA1Q8NCQ7 364 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF512BQ96KM6 892 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 CCDC17Q96LX7 622 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 USH1CQ9Y6N9 552 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 RASGRF2O14827 1237 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 GYPCP04921 128 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 TRIP13Q15645 432 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-201ENST00000267199 MS4A14Q96JA4 679 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 PHF20Q9BVI0 1012 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 VCX3BQ9H321 246 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
VPS33A-201ENST00000267199 ACSL3O95573 720 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ODR4Q5SWX8 454 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PPM1KQ8N3J5 372 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 AGXT2Q9BYV1 514 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 KANSL2Q9H9L4 492 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 AGPAT5Q9NUQ2 364 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 EXOC7Q9UPT5 735 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 LRRIQ3A6PVS8 624 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 USP17L5A8MUK1 530 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PLA2G4BP0C869 781 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 UNC13DQ70J99 1090 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 LRRC8CQ8TDW0 803 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ATP6V1G3Q96LB4 118 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 LARSQ9P2J5 1176 aaKnown RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PASKQ96RG2 1323 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 FOSP01100 380 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 SERPINB2P05120 415 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 SERPING1P05155 500 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 UBXN2AP68543 259 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 DCUN1D2Q6PH85 259 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 FOXR1Q6PIV2 292 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 MIER3Q7Z3K6 550 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PARP9Q8IXQ6 854 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 CHURC1Q8WUH1 139 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 CCDC127Q96BQ5 260 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 CCT8L2Q96SF2 557 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PSMD1Q99460 953 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ZMYND12Q9H0C1 365 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 CNOT10Q9H9A5 744 aaKnown RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 NOP53Q9NZM5 478 aaKnown RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 L1RE1Q9UN81 338 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 BZW2Q9Y6E2 419 aaKnown RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ORC4O43929 436 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 AFPP02771 609 aaKnown RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ALDH1B1P30837 517 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 GRAPQ13588 217 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 PHLDB3Q6NSJ2 640 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 FAM47EQ6ZV65 393 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF34Q8IZ26 560 aa12.54□□□□□ -0.4
VPS33A-201ENST00000267199 GRAPLQ8TC17 118 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-201ENST00000267199 COL15A1P39059 1388 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 H0YIN7 160 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 ATF7P17544 494 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 HNRNPH1P31943 449 aaKnown RBP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 DPYDQ12882 1025 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 SMIM5Q71RC9 77 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS33A-201ENST00000267199 SPDL1Q96EA4 605 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 HAUS2Q9NVX0 235 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 TMEM260Q9NX78 707 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 K7ENM7 598 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 FERP16591 822 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 PSMD2Q13200 908 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 ABCB5Q2M3G0 1257 aa12.53□□□□□ -0.4
VPS33A-201ENST00000267199 TBC1D9BQ66K14 1250 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms