RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OTUD5Q96G74 571 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 MTRQ99707 1265 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 AGXT2Q9BYV1 514 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 C17orf75Q9HAS0 396 aa14.95□□□□□ -0.02
LDLR-201ENST00000252444 TOPORSQ9NS56 1045 aaPredicted RBP14.95□□□□□ -0.02
LDLR-201ENST00000252444 OPA1O60313 960 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 MAN1A1P33908 653 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 NELFCDQ8IXH7 590 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 EMILIN3Q9NT22 766 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 AKT3Q9Y243 479 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 PCDHA10Q9Y5I2 948 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 IKBKGQ9Y6K9 419 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 CCDC66A2RUB6 948 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 GOLGA6CA6NDK9 693 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 GOLGA6BA6NDN3 693 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 GOLGA6DP0CG33 693 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 VEGFAP15692 232 aaPredicted RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 IBSPP21815 317 aaPredicted RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 MTMR2Q13614 643 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 UBE2SQ16763 222 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 SLC4A9Q96Q91 983 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 GOLGA6AQ9NYA3 693 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 PCDHB6Q9Y5E3 794 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 SLC16A3O15427 465 aaKnown RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 GH1P01241 217 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 EIF2AK2P19525 551 aaKnown RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 UBXN2AP68543 259 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 PRPF4BQ13523 1007 aaKnown RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 STOX1Q6ZVD7 989 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 HAUS4Q9H6D7 363 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 MAN1B1Q9UKM7 699 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 PITPNM2Q9BZ72 1349 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 CARNS1A5YM72 827 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 ATP5DP30049 168 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 FXR2P51116 673 aaKnown RBP eCLIP14.94□□□□□ -0.021e-6■□□□□ 10.3
LDLR-201ENST00000252444 HADHQ16836 314 aaKnown RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 EXOC3L4Q17RC7 722 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 PROCA1Q8NCQ7 364 aaPredicted RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 CNOT6LQ96LI5 555 aaKnown RBP14.94□□□□□ -0.02
LDLR-201ENST00000252444 CCDC113Q9H0I3 377 aa14.94□□□□□ -0.02
LDLR-201ENST00000252444 HSF2BPO75031 334 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 LARGE1O95461 756 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 CDC27P30260 824 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 NR5A1Q13285 461 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SPECC1Q5M775 1068 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 GPR161Q8N6U8 529 aaKnown RBP14.93□□□□□ -0.02
LDLR-201ENST00000252444 TMEM63CQ9P1W3 806 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SLC9A2Q9UBY0 812 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 HARSP12081 509 aaKnown RBP14.93□□□□□ -0.02
LDLR-201ENST00000252444 MAGEA1P43355 309 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 CACNB3P54284 484 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 PTK2Q05397 1052 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SARM1Q6SZW1 724 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SND1Q7KZF4 910 aaKnown RBP eCLIP14.93□□□□□ -0.022e-7■■■□□ 16.9
LDLR-201ENST00000252444 DEFB132Q7Z7B7 95 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 CCDC170Q8IYT3 715 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 HAUS1Q96CS2 278 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 C16orf45Q96MC5 204 aaPredicted RBP14.93□□□□□ -0.02
LDLR-201ENST00000252444 ANKEF1Q9NU02 776 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 PRR12Q9ULL5 1215 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 PCDHA5Q9Y5H7 936 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 RBSNQ9H1K0 784 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SMARCAD1Q9H4L7 1026 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 LOC102724159A0A0B4J2E5 919 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 RRN3P2A6NIE6 340 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 A6NNZ2 444 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 PIK3CAP42336 1068 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 PWP2Q15269 919 aaKnown RBP14.93□□□□□ -0.02
LDLR-201ENST00000252444 TUBB8Q3ZCM7 444 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 SRBD1Q8N5C6 995 aaKnown RBP14.93□□□□□ -0.02
LDLR-201ENST00000252444 LRFN2Q9ULH4 789 aa14.93□□□□□ -0.02
LDLR-201ENST00000252444 NR2F2P24468 414 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 CLCN1P35523 988 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 FCGRTP55899 365 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 ZNF827Q17R98 1081 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 XKR3Q5GH77 459 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 DNERQ8NFT8 737 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 GRK7Q8WTQ7 553 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 NSMCE1Q8WV22 266 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 PSPC1Q8WXF1 523 aaKnown RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 ACTN4O43707 911 aaKnown RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 PLA2G6O60733 806 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 MTMR14Q8NCE2 650 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 TRIM62Q9BVG3 475 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 SPOPO43791 374 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 SLC26A2P50443 739 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 CYP2J2P51589 502 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 CXCL9Q07325 125 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 MXD4Q14582 209 aaPredicted RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 GUF1Q8N442 669 aaKnown RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 SLC44A5Q8NCS7 719 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 CLIC6Q96NY7 704 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 POLR3CQ9BUI4 534 aaPredicted RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 FAM107BQ9H098 131 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 TYW1Q9NV66 732 aaKnown RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 TRMT1Q9NXH9 659 aaKnown RBP14.92□□□□□ -0.02
LDLR-201ENST00000252444 TERF1P54274 439 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 ABI1Q8IZP0 508 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 TSPYL1Q9H0U9 437 aa14.92□□□□□ -0.02
LDLR-201ENST00000252444 ELP3Q9H9T3 547 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms