RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LY75O60449 1722 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 SLC20A2Q08357 652 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 ASIC2Q16515 512 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 PPP4R3CPQ6ZMV5 832 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 CRAMP1Q96RY5 1269 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 DNAJC5Q9H3Z4 198 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 TMEM51Q9NW97 253 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 TRIM66O15016 1216 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 HSF2BPO75031 334 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 DNA2P51530 1060 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 USP11P51784 963 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 APBA1Q02410 837 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 PPFIA1Q13136 1202 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 IFT20Q8IY31 132 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 FAM133AQ8N9E0 248 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 CAVIN3Q969G5 261 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 KCNMB3Q9NPA1 279 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 PCDHA1Q9Y5I3 950 aa20.6■□□□□ 0.89
CPSF3-201ENST00000238112 SHOX2O60902 331 aaPredicted RBP20.59■□□□□ 0.89
CPSF3-201ENST00000238112 FTCDO95954 541 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 KLRC1P26715 233 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 ENOX2Q16206 610 aaKnown RBP20.59■□□□□ 0.89
CPSF3-201ENST00000238112 KIAA0753Q2KHM9 967 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 EDRF1Q3B7T1 1238 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 ALS2CLQ60I27 953 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 SLFN12Q8IYM2 578 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 ANO3Q9BYT9 981 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 AIPL1Q9NZN9 384 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 MYH7BA7E2Y1 1941 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 PPEF1O14829 653 aaPredicted RBP20.59■□□□□ 0.89
CPSF3-201ENST00000238112 QRICH1Q2TAL8 776 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.59■□□□□ 0.89
CPSF3-201ENST00000238112 CERS5Q8N5B7 392 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 LRRC4BQ9NT99 713 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 ADAMTS1Q9UHI8 967 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 PITPNM2Q9BZ72 1349 aa20.59■□□□□ 0.89
CPSF3-201ENST00000238112 A0A087X0T9 212 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 MED24O75448 989 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 FAM228BP0C875 321 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 NR2F2P24468 414 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 STAT3P40763 770 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 SCNN1DP51172 638 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 KCNH2Q12809 1159 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 ZC3H3Q8IXZ2 948 aaKnown RBP20.58■□□□□ 0.89
CPSF3-201ENST00000238112 SH3GL2Q99962 352 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 PLEKHA4Q9H4M7 779 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 USP21Q9UK80 565 aa20.58■□□□□ 0.89
CPSF3-201ENST00000238112 GRID2IPA4D2P6 1211 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 POTEFA5A3E0 1075 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 POTEIP0CG38 1075 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 SLC12A3P55017 1021 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 NNTQ13423 1086 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 POTEGQ6S5H5 508 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 POTEEQ6S8J3 1075 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 GANQ9H2C0 597 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 DHX36Q9H2U1 1008 aaKnown RBP20.58■□□□□ 0.88
CPSF3-201ENST00000238112 PCDHGC5Q9Y5F6 944 aa20.58■□□□□ 0.88
CPSF3-201ENST00000238112 LTBP4Q8N2S1 1624 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 FRMD3A2A2Y4 597 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 MEI1Q5TIA1 1274 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 CDC42EP5Q6NZY7 148 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 GBP6Q6ZN66 633 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 SP8Q8IXZ3 490 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 TSEN2Q8NCE0 465 aaKnown RBP20.57■□□□□ 0.88
CPSF3-201ENST00000238112 CCDC17Q96LX7 622 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 ZC3H12CQ9C0D7 883 aaKnown RBP20.57■□□□□ 0.88
CPSF3-201ENST00000238112 HDAC9Q9UKV0 1011 aa20.57■□□□□ 0.88
CPSF3-201ENST00000238112 CYP3A7-CYP3A51PA0A087WV96 503 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 HEXIM1O94992 359 aaKnown RBP20.56■□□□□ 0.88
CPSF3-201ENST00000238112 CYP3A7P24462 503 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 ARSHQ5FYA8 562 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 ERMNQ8TAM6 284 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 TOM1O60784 492 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 PAK2Q13177 524 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 CDC37Q16543 378 aaPredicted RBP20.56■□□□□ 0.88
CPSF3-201ENST00000238112 MXD3Q9BW11 206 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 CAPS2Q9BXY5 557 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 PACSIN1Q9BY11 444 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 GDF3Q9NR23 364 aa20.56■□□□□ 0.88
CPSF3-201ENST00000238112 GLI1P08151 1106 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 EPB41P11171 864 aaKnown RBP20.55■□□□□ 0.88
CPSF3-201ENST00000238112 GUCY2DQ02846 1103 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 AP3B2Q13367 1082 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 MOXD1Q6UVY6 613 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 TEKT1Q969V4 418 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 SPAG5Q96R06 1193 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 EPB41L5Q9HCM4 733 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 ARMCX3Q9UH62 379 aaPredicted RBP20.55■□□□□ 0.88
CPSF3-201ENST00000238112 PACSIN2Q9UNF0 486 aaPredicted RBP20.55■□□□□ 0.88
CPSF3-201ENST00000238112 PRR16Q569H4 304 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 IFT81Q8WYA0 676 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 TAF4BQ92750 862 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 MBOAT7Q96N66 472 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 DNM3Q9UQ16 869 aa20.55■□□□□ 0.88
CPSF3-201ENST00000238112 IRAK1P51617 712 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 ARHGAP4P98171 946 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 KNOP1Q1ED39 458 aaKnown RBP20.54■□□□□ 0.88
CPSF3-201ENST00000238112 DNAJC21Q5F1R6 531 aaKnown RBP20.54■□□□□ 0.88
CPSF3-201ENST00000238112 C10orf76Q5T2E6 689 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 FRMD5Q7Z6J6 570 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms