RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PCDHA2Q9Y5H9 948 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 PPP1R11O60927 126 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 FSBPO95073 299 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 ZBTB48P10074 688 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 SLC9A1P19634 815 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 NFIXQ14938 502 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 QPCTQ16769 361 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 FAM26FQ5R3K3 315 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 DPY19L2P1Q6NXN4 242 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 SCFD1Q8WVM8 642 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 SYN2Q92777 582 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 NLRP3Q96P20 1036 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 RTFDC1Q9BY42 306 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 TAF1DQ9H5J8 278 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 TMBIM4Q9HC24 238 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.62□□□□□ -0.23
NUP88-201ENST00000225696 KIAA0754O94854 1291 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 CASP5P51878 434 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 ZNF844Q08AG5 666 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 PTF1AQ7RTS3 328 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 IRF2BP2Q7Z5L9 587 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 LRRC47Q8N1G4 583 aaKnown RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 NEDD1Q8NHV4 660 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 WHAMMQ8TF30 809 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 NCAPGQ9BPX3 1015 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 DDX47Q9H0S4 455 aaKnown RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 BCAS3Q9H6U6 928 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 CD248Q9HCU0 757 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 CNOT8Q9UFF9 292 aaKnown RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 H0YHG0 523 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 CEP104O60308 925 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 PDHBP11177 359 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 PDIA5Q14554 519 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 TMEM266Q2M3C6 531 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 SPTY2D1Q68D10 685 aaPredicted RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 AMIGO3Q86WK7 504 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 PROM2Q8N271 834 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 ANKRD2Q9GZV1 360 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 ISCUQ9H1K1 167 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 KCTD10Q9H3F6 313 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 RIOX1Q9H6W3 641 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 GPCPD1Q9NPB8 672 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 AIPL1Q9NZN9 384 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 ANKIB1Q9P2G1 1089 aa13.61□□□□□ -0.23
NUP88-201ENST00000225696 AJAP1Q9UKB5 411 aaPredicted RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 DDX60LQ5H9U9 1706 aaKnown RBP13.61□□□□□ -0.23
NUP88-201ENST00000225696 MYH4Q9Y623 1939 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 SART1O43290 800 aaKnown RBP13.6□□□□□ -0.23
NUP88-201ENST00000225696 KIF4AO95239 1232 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 FAM107AO95990 144 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 BTDP43251 543 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 ADCY7P51828 1080 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 PPP4CP60510 307 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 KCNH2Q12809 1159 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 PSMD2Q13200 908 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 RPS6KA1Q15418 735 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 C6orf89Q6UWU4 347 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 NBPF5PQ86XG9 351 aaPredicted RBP13.6□□□□□ -0.23
NUP88-201ENST00000225696 LRRC57Q8N9N7 239 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 RBM46Q8TBY0 533 aaKnown RBP13.6□□□□□ -0.23
NUP88-201ENST00000225696 SCFD2Q8WU76 684 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 CYFIP2Q96F07 1278 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 PLCB1Q9NQ66 1216 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 GEMIN8Q9NWZ8 242 aaKnown RBP13.6□□□□□ -0.23
NUP88-201ENST00000225696 SLC12A6Q9UHW9 1150 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 KIAA1024Q9UPX6 916 aa13.6□□□□□ -0.23
NUP88-201ENST00000225696 ATXN2Q99700 1313 aaKnown RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 HMGB1P1B2RPK0 211 aaPredicted RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 SF3B2Q13435 895 aaKnown RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 ADAM9Q13443 819 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 ASIC2Q16515 512 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 CCDC13Q8IYE1 715 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 METTL13Q8N6R0 699 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 JPH2Q9BR39 696 aaPredicted RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 PAGR1Q9BTK6 254 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 CELF4Q9BZC1 486 aaKnown RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 BCCIPQ9P287 314 aaKnown RBP eCLIP13.59□□□□□ -0.23
NUP88-201ENST00000225696 AMACRQ9UHK6 382 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 NR2E1Q9Y466 385 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 MAST2Q6P0Q8 1798 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 ESYT2A0FGR8 921 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 POTEB3A0JP26 581 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 A6NNZ2 444 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 POTECB2RU33 542 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 DAPK3O43293 454 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 BAG3O95817 575 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 STAT3P40763 770 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 TUBB8Q3ZCM7 444 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 ARSHQ5FYA8 562 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 HERC4Q5GLZ8 1057 aaPredicted RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 TTBK2Q6IQ55 1244 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 POTEBQ6S5H4 581 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 CABS1Q96KC9 395 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 DDX20Q9UHI6 824 aaKnown RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 DDX25Q9UHL0 483 aaKnown RBP13.59□□□□□ -0.23
NUP88-201ENST00000225696 FBXL5Q9UKA1 691 aa13.59□□□□□ -0.23
NUP88-201ENST00000225696 DNM1LO00429 736 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 SLURP2P0DP57 97 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 CTNNA1P35221 906 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms