RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 LRRC8DQ7L1W4 858 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 SGMS1Q86VZ5 419 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 CCDC155Q8N6L0 562 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PGBD1Q96JS3 809 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 JAKMIP1Q96N16 626 aaKnown RBP11.83□□□□□ -0.52
SCN1A-222ENST00000642141 TUT1Q9H6E5 874 aaKnown RBP11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PRDM6Q9NQX0 595 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 MYH7BA7E2Y1 1941 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 FRMPD4Q14CM0 1322 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 GOLGA8AA7E2F4 631 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 GOLGA8BA8MQT2 603 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 RFXAPO00287 272 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 NBNO60934 754 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 ATP9AO75110 1047 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 CA3P07451 260 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 PFKMP08237 780 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 HOXD8P13378 290 aaPredicted RBP11.82□□□□□ -0.52
SCN1A-222ENST00000642141 ITGB5P18084 799 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 CDC27P30260 824 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 ICAM3P32942 547 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 NAPAP54920 295 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 APOBRQ0VD83 1088 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 NEDD9Q14511 834 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 WWC2Q6AWC2 1192 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 TYW1BQ6NUM6 668 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 METTL7BQ6UX53 244 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 NLRX1Q86UT6 975 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 MICALL1Q8N3F8 863 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 CAGE1Q8TC20 777 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 AFAP1L1Q8TED9 768 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 ATP6V0A1Q93050 837 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 UIMC1Q96RL1 719 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 GAS2L1Q99501 681 aaPredicted RBP11.82□□□□□ -0.52
SCN1A-222ENST00000642141 GPR20Q99678 358 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 SETD4Q9NVD3 440 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 PCDHA6Q9UN73 950 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 PCDHA8Q9Y5H6 950 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 PCDHA11Q9Y5I1 949 aa11.82□□□□□ -0.52
SCN1A-222ENST00000642141 C17orf102A2RUQ5 167 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 SPDYE3A6NKU9 549 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 TREHO43280 583 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 STAM2O75886 525 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 ARHGEF15O94989 841 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 CTSHP09668 335 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 MARK3P27448 753 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 ADD1P35611 737 aaKnown RBP11.81□□□□□ -0.52
SCN1A-222ENST00000642141 FUT2Q10981 343 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 PTK7Q13308 1070 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 MBTPS1Q14703 1052 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 TRIM71Q2Q1W2 868 aaKnown RBP11.81□□□□□ -0.52
SCN1A-222ENST00000642141 TSGA10IPQ3SY00 556 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 FAM117BQ6P1L5 589 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 Q6ZUG5 572 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 SPRED2Q7Z698 418 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 HERC6Q8IVU3 1022 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 CYP2W1Q8TAV3 490 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 ZBED2Q9BTP6 218 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 OSBPL7Q9BZF2 842 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 RNPEPQ9H4A4 650 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 FAM217BQ9NTX9 383 aaPredicted RBP11.81□□□□□ -0.52
SCN1A-222ENST00000642141 TMEM260Q9NX78 707 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 SNX14Q9Y5W7 946 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 CNTNAP5Q8WYK1 1306 aa11.81□□□□□ -0.52
SCN1A-222ENST00000642141 LCHNA4D1U4 455 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 TCF7P36402 384 aaPredicted RBP11.8□□□□□ -0.52
SCN1A-222ENST00000642141 KCNJ6P48051 423 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 DEFB103AP81534 67 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 ARHGAP4P98171 946 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 MTMR1Q13613 665 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 KRT32Q14532 448 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 XRRA1Q6P2D8 792 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 TRAF7Q6Q0C0 670 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 SERINC5Q86VE9 423 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 BRF1Q92994 677 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 COL25A1Q9BXS0 654 aaPredicted RBP11.8□□□□□ -0.52
SCN1A-222ENST00000642141 USP26Q9BXU7 913 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 RBM28Q9NW13 759 aaKnown RBP11.8□□□□□ -0.52
SCN1A-222ENST00000642141 REV3LO60673 3130 aa11.8□□□□□ -0.52
SCN1A-222ENST00000642141 TRIP12Q14669 1992 aaPredicted RBP11.79□□□□□ -0.52
SCN1A-222ENST00000642141 DOCK5Q9H7D0 1870 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 SMCO2A6NFE2 343 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 EPOPA6NHQ4 379 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 RSPH10B2B2RC85 870 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 STXBP3O00186 592 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 ADAMTS3O15072 1205 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 TLL1O43897 1013 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 RSPH10BP0C881 870 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 KCNA2P16389 499 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 ADCY7P51828 1080 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 WDR5P61964 334 aaKnown RBP11.79□□□□□ -0.52
SCN1A-222ENST00000642141 KRT40Q6A162 431 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 ARNTL2Q8WYA1 636 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 ZBTB10Q96DT7 871 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 SLC9A7Q96T83 725 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 SENP7Q9BQF6 1050 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 LARP6Q9BRS8 491 aaKnown RBP11.79□□□□□ -0.52
SCN1A-222ENST00000642141 RIC8AQ9NPQ8 531 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 UBIAD1Q9Y5Z9 338 aa11.79□□□□□ -0.52
SCN1A-222ENST00000642141 GBF1Q92538 1859 aa11.78□□□□□ -0.52
SCN1A-222ENST00000642141 VCANP13611 3396 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms