RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 JADE2Q9NQC1 790 aa22.04■■□□□ 1.12
CLN3-260ENST00000637578 ESYT2A0FGR8 921 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 ATP9AO75110 1047 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 KCNA2P16389 499 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 RBL2Q08999 1139 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 BFSP2Q13515 415 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 RPUSD2Q8IZ73 545 aaKnown RBP22.03■■□□□ 1.12
CLN3-260ENST00000637578 ZNF274Q96GC6 653 aaPredicted RBP22.03■■□□□ 1.12
CLN3-260ENST00000637578 ALG1Q9BT22 464 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 ZMYND12Q9H0C1 365 aa22.03■■□□□ 1.12
CLN3-260ENST00000637578 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 H3BRB1 525 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 FGBP02675 491 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 LGALS2P05162 132 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 IQCF3P0C7M6 154 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 HOXC8P31273 242 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 AP3B2Q13367 1082 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 CAGE1Q8TC20 777 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 DHX38Q92620 1227 aaKnown RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 RNF26Q9BY78 433 aaPredicted RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 UPF3BQ9BZI7 483 aaKnown RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 TUT1Q9H6E5 874 aaKnown RBP22.02■■□□□ 1.12
CLN3-260ENST00000637578 TELO2Q9Y4R8 837 aa22.02■■□□□ 1.12
CLN3-260ENST00000637578 NOP56O00567 594 aaKnown RBP22.01■■□□□ 1.11
CLN3-260ENST00000637578 RFC2P35250 354 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 ANAPC15P60006 121 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 MTMR1Q13613 665 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 HIC1Q14526 733 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 PHKBQ93100 1093 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 IL17RAQ96F46 866 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 ANO3Q9BYT9 981 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 NOD1Q9Y239 953 aa22.01■■□□□ 1.11
CLN3-260ENST00000637578 PFKMP08237 780 aa22■■□□□ 1.11
CLN3-260ENST00000637578 SREBF1P36956 1147 aa22■■□□□ 1.11
CLN3-260ENST00000637578 RETREG2Q8NC44 543 aa22■■□□□ 1.11
CLN3-260ENST00000637578 MXRA8Q9BRK3 442 aa22■■□□□ 1.11
CLN3-260ENST00000637578 NCOA5Q9HCD5 579 aaKnown RBP22■■□□□ 1.11
CLN3-260ENST00000637578 CCT2P78371 535 aaKnown RBP21.99■■□□□ 1.11
CLN3-260ENST00000637578 PTK7Q13308 1070 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 CCDC12Q8WUD4 166 aaPredicted RBP21.99■■□□□ 1.11
CLN3-260ENST00000637578 CRYGNQ8WXF5 182 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 PGBD1Q96JS3 809 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 KCNH7Q9NS40 1196 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 PDRG1Q9NUG6 133 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 TMEM260Q9NX78 707 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 CXXC1Q9P0U4 656 aaPredicted RBP21.99■■□□□ 1.11
CLN3-260ENST00000637578 TRIM71Q2Q1W2 868 aaKnown RBP21.99■■□□□ 1.11
CLN3-260ENST00000637578 CEP55Q53EZ4 464 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 CCDC155Q8N6L0 562 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 CYP2W1Q8TAV3 490 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 AFAP1L1Q8TED9 768 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 C22orf23Q9BZE7 217 aa21.99■■□□□ 1.11
CLN3-260ENST00000637578 UPF2Q9HAU5 1272 aaKnown RBP21.99■■□□□ 1.11
CLN3-260ENST00000637578 TMEM265A0A087WTH1 108 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 MEIS1O00470 390 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 ADAMTS3O15072 1205 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 ZNF200P98182 395 aaPredicted RBP21.98■■□□□ 1.11
CLN3-260ENST00000637578 AKAP17AQ02040 695 aaKnown RBP21.98■■□□□ 1.11
CLN3-260ENST00000637578 GPNMBQ14956 572 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 ZNF697Q5TEC3 545 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 MCTP2Q6DN12 878 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 OTOP2Q7RTS6 562 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 SLC26A6Q9BXS9 759 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 SEMA6BQ9H3T3 888 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 C6orf50Q9HD87 102 aa21.98■■□□□ 1.11
CLN3-260ENST00000637578 GSTTP1A0A1W2PQM5 241 aa21.97■■□□□ 1.11
CLN3-260ENST00000637578 SMIM10L2AP0DMW4 78 aa21.97■■□□□ 1.11
CLN3-260ENST00000637578 SMIM10L2BP0DMW5 78 aa21.97■■□□□ 1.11
CLN3-260ENST00000637578 SEPT1Q8WYJ6 367 aa21.97■■□□□ 1.11
CLN3-260ENST00000637578 GUCD1Q96NT3 240 aa21.97■■□□□ 1.11
CLN3-260ENST00000637578 MTIF3Q9H2K0 278 aaKnown RBP21.97■■□□□ 1.11
CLN3-260ENST00000637578 TTYH1Q9H313 450 aaPredicted RBP21.97■■□□□ 1.11
CLN3-260ENST00000637578 CYP3A4P08684 503 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 CKBP12277 381 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 SELPP16109 830 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 GNA11P29992 359 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 ARHGAP4P98171 946 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 JAKMIP3Q5VZ66 844 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 NIPA1Q7RTP0 329 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 SERINC5Q86VE9 423 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 WNT8BQ93098 351 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 LARP6Q9BRS8 491 aaKnown RBP21.96■■□□□ 1.11
CLN3-260ENST00000637578 RNPEPQ9H4A4 650 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 SH3GLB2Q9NR46 395 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 STXBP5LQ9Y2K9 1186 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 DOCK5Q9H7D0 1870 aa21.96■■□□□ 1.11
CLN3-260ENST00000637578 PPFIA3O75145 1194 aa21.95■■□□□ 1.11
CLN3-260ENST00000637578 PARNO95453 639 aaKnown RBP21.95■■□□□ 1.11
CLN3-260ENST00000637578 TCF7P36402 384 aaPredicted RBP21.95■■□□□ 1.11
CLN3-260ENST00000637578 RBM25P49756 843 aaKnown RBP21.95■■□□□ 1.11
CLN3-260ENST00000637578 TRAF7Q6Q0C0 670 aa21.95■■□□□ 1.11
CLN3-260ENST00000637578 DEFB128Q7Z7B8 93 aa21.95■■□□□ 1.11
CLN3-260ENST00000637578 TRIM50Q86XT4 487 aa21.95■■□□□ 1.11
CLN3-260ENST00000637578 ZNF215Q9UL58 517 aaPredicted RBP21.95■■□□□ 1.11
CLN3-260ENST00000637578 NFASCO94856 1347 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 C17orf102A2RUQ5 167 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 GRXCR1A8MXD5 290 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 ARP10275 920 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 DNAJB2P25686 324 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms