RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SLC39A2Q9NP94 309 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 HOMER2Q9NSB8 354 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 EXOC1Q9NV70 894 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 GGA3Q9NZ52 723 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 RWDD2AQ9UIY3 292 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 POTEB3A0JP26 581 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 POTECB2RU33 542 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 GCOM1H8Y6P7 765 aaPredicted RBP12.79□□□□□ -0.36
CLN6-217ENST00000636964 CTNND1O60716 968 aaKnown RBP12.79□□□□□ -0.36
CLN6-217ENST00000636964 POLR2MP0CAP2 368 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 HIRAP54198 1017 aaPredicted RBP12.79□□□□□ -0.36
CLN6-217ENST00000636964 AMPD3Q01432 767 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 NCAPH2Q6IBW4 605 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 POTEBQ6S5H4 581 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 FAM160B2Q86V87 743 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 LENG9Q96B70 501 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 WRNIP1Q96S55 665 aa12.79□□□□□ -0.36
CLN6-217ENST00000636964 CYP3A7-CYP3A51PA0A087WV96 503 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 CYP3A7P24462 503 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 SMC1AQ14683 1233 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 KCNB1Q14721 858 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 CDKAL1Q5VV42 579 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 GIMAP8Q8ND71 665 aaPredicted RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 RAD54LQ92698 747 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 CARD6Q9BX69 1037 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 GPRC5DQ9NZD1 345 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 CCPG1Q9ULG6 757 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 DDNO94850 711 aaPredicted RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 CALRP27797 417 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 APTXQ7Z2E3 356 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 PACS2Q86VP3 889 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 ETNPPLQ8TBG4 499 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 NAP1L4Q99733 375 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 VPS16Q9H269 839 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 SPON1Q9HCB6 807 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 DNAI1Q9UI46 699 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 RRP15Q9Y3B9 282 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 KIF2AO00139 706 aaPredicted RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 MEIS1O00470 390 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 MSH4O15457 936 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 FLOT1O75955 427 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 MYL1P05976 194 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 CACNB1Q02641 598 aaPredicted RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 NR1I3Q14994 352 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 PIAS4Q8N2W9 510 aaPredicted RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 DDX12PQ92771 950 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 HOOK2Q96ED9 719 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 MAGEF1Q9HAY2 307 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 RAVER2Q9HCJ3 691 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 STK17AQ9UEE5 414 aa12.78□□□□□ -0.36
CLN6-217ENST00000636964 MRPL11Q9Y3B7 192 aaKnown RBP12.78□□□□□ -0.36
CLN6-217ENST00000636964 MED24O75448 989 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 LMNB1P20700 586 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 ADKP55263 362 aaKnown RBP12.77□□□□□ -0.36
CLN6-217ENST00000636964 CPLX3Q8WVH0 158 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 MBOAT7Q96N66 472 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 SLF1Q9BQI6 1058 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 FUT8Q9BYC5 575 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 EMILIN3Q9NT22 766 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 SUFUQ9UMX1 484 aa12.77□□□□□ -0.36
CLN6-217ENST00000636964 POTEFA5A3E0 1075 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 PIK3CDO00329 1044 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 NFIBO00712 420 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 POTEIP0CG38 1075 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ALAS1P13196 640 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ETF1P62495 437 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 KRT31Q15323 416 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 TMEM119Q4V9L6 283 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 TEX35Q5T0J7 233 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 POTEGQ6S5H5 508 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 POTEEQ6S8J3 1075 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 SLFN12Q8IYM2 578 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 PRPF38AQ8NAV1 312 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 CCDC47Q96A33 483 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 CCDC97Q96F63 343 aaPredicted RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 PAIP2Q9BPZ3 127 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 KIAA1683Q9H0B3 1180 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 TAB2Q9NYJ8 693 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ADAM21Q9UKJ8 722 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ZNF536O15090 1300 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 NPHP3-ACAD11A0A0J9YXS1 232 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 A0A1B0GTH6 734 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 VCAM1P19320 739 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 CYP4A11Q02928 519 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 Q4G0T1 1027 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 GLIS3Q8NEA6 775 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 UBXN4Q92575 508 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ITFG2Q969R8 447 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 TRIM47Q96LD4 638 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 SRRTQ9BXP5 876 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 ADD3Q9UEY8 706 aaKnown RBP12.77□□□□□ -0.37
CLN6-217ENST00000636964 ZHX2Q9Y6X8 837 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 ATAD5Q96QE3 1844 aa12.77□□□□□ -0.37
CLN6-217ENST00000636964 PSMA7O14818 248 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 PSMC6P62333 389 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 STIM1Q13586 685 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 LRRC41Q15345 812 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 SPECC1LQ69YQ0 1117 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 KIAA0895Q8NCT3 520 aa12.76□□□□□ -0.37
CLN6-217ENST00000636964 CCDC150Q8NCX0 1101 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms