RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 E9PMD0 336 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 ZMYND10O75800 440 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 CAPN2P17655 700 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 CYP11B2P19099 503 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 GFPT1Q06210 699 aaPredicted RBP14.1□□□□□ -0.15
LINC00540-203ENST00000631321 EDRF1Q3B7T1 1238 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 SLC9C1Q4G0N8 1177 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 SFMBT2Q5VUG0 894 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 APOBEC3HQ6NTF7 200 aaKnown RBP14.1□□□□□ -0.15
LINC00540-203ENST00000631321 NFRKBQ6P4R8 1299 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 KCTD1Q719H9 257 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 SCFD1Q8WVM8 642 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 TLR10Q9BXR5 811 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 FAM204AQ9H8W3 233 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 KIAA1024Q9UPX6 916 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 F8W031 263 aaPredicted RBP14.09□□□□□ -0.15
LINC00540-203ENST00000631321 RIMBP2O15034 1052 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 TNFRSF8P28908 595 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 SLC1A4P43007 532 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 QRICH1Q2TAL8 776 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 SLC27A3Q5K4L6 730 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 KLHDC7AQ5VTJ3 777 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 LEKR1Q6ZMV7 388 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 GPBP1Q86WP2 473 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 DCAF4Q8WV16 495 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 CRYGNQ8WXF5 182 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 GJD4Q96KN9 370 aaPredicted RBP14.09□□□□□ -0.15
LINC00540-203ENST00000631321 LSM14BQ9BX40 385 aaKnown RBP14.09□□□□□ -0.15
LINC00540-203ENST00000631321 RNF14Q9UBS8 474 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 AGPSO00116 658 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 IVLP07476 585 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 SLC12A3P55017 1021 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 RASSF7Q02833 373 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 RAD51AP2Q09MP3 1159 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 AP3B2Q13367 1082 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 SLFN12Q8IYM2 578 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 LRRC1Q9BTT6 524 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 ANO3Q9BYT9 981 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 AIPL1Q9NZN9 384 aa14.09□□□□□ -0.15
LINC00540-203ENST00000631321 POTEB3A0JP26 581 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 POTECB2RU33 542 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L15C9J2P7 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L13C9JLJ4 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L11C9JVI0 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L18D6R9N7 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L22D6RA61 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L17D6RBQ6 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L19D6RCP7 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L20D6RJB6 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 PHACTR2O75167 634 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 SSBP05455 408 aaKnown RBP eCLIP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L24Q0WX57 530 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 ARSHQ5FYA8 562 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 HERC4Q5GLZ8 1057 aaPredicted RBP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 USP17L6PQ6QN14 398 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 POTEBQ6S5H4 581 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 GSPT2Q8IYD1 628 aaKnown RBP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 TEKT1Q969V4 418 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 DRC1Q96MC2 740 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 CRACR2AQ9BSW2 395 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 ZC3H12CQ9C0D7 883 aaKnown RBP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 DNAJC18Q9H819 358 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 LUC7LQ9NQ29 371 aaKnown RBP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 NYAP2Q9P242 653 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.08□□□□□ -0.16
LINC00540-203ENST00000631321 SPATA31A6Q5VVP1 1343 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 MYH7BA7E2Y1 1941 aa14.08□□□□□ -0.16
LINC00540-203ENST00000631321 MPHOSPH10O00566 681 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 SPIRE1Q08AE8 756 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 NAB2Q15742 525 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 EZH2Q15910 746 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 GLE1Q53GS7 698 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 TDRD12Q587J7 1177 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 HAUS3Q68CZ6 603 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 MCTP2Q6DN12 878 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 ETNPPLQ8TBG4 499 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 AFAP1L1Q8TED9 768 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 GANQ9H2C0 597 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 DHX36Q9H2U1 1008 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 NLRC4Q9NPP4 1024 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 EMILIN3Q9NT22 766 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 DMGDHQ9UI17 866 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 TBX3O15119 743 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 MED24O75448 989 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 ERCC3P19447 782 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 GGCXP38435 758 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 PAFAH1B1P43034 410 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 POLR2FP61218 127 aaKnown RBP14.07□□□□□ -0.16
LINC00540-203ENST00000631321 NFIAQ12857 509 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 SLC18A3Q16572 532 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 NELFCDQ8IXH7 590 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 HDAC7Q8WUI4 952 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 MXD3Q9BW11 206 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 TBC1D7Q9P0N9 293 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 PCDHA1Q9Y5I3 950 aa14.07□□□□□ -0.16
LINC00540-203ENST00000631321 NPHP3-ACAD11A0A0J9YXS1 232 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 MEIS2O14770 477 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 NCK2O43639 380 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 SCNN1DP51172 638 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms