RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRIM29Q14134 588 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 KATNAL1Q9BW62 490 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 BRMS1Q9HCU9 246 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 USP11P51784 963 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 HMGN5P82970 282 aaKnown RBP23.57■■□□□ 1.36
CLN3-240ENST00000631023 NPY5RQ15761 445 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 NBPF20Q3BBV1 942 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 NFRKBQ6P4R8 1299 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 KRT25Q7Z3Z0 450 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 PLA2G4DQ86XP0 818 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 SDF4Q9BRK5 362 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 BCAS3Q9H6U6 928 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 PDLIM7Q9NR12 457 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 TMEM39AQ9NV64 488 aa23.57■■□□□ 1.36
CLN3-240ENST00000631023 TRIP12Q14669 1992 aaPredicted RBP23.56■■□□□ 1.36
CLN3-240ENST00000631023 M0R2N6 131 aa23.56■■□□□ 1.36
CLN3-240ENST00000631023 FAAP100Q0VG06 881 aa23.56■■□□□ 1.36
CLN3-240ENST00000631023 FAM126BQ8IXS8 530 aa23.56■■□□□ 1.36
CLN3-240ENST00000631023 LBHD1Q9BQE6 289 aaPredicted RBP23.56■■□□□ 1.36
CLN3-240ENST00000631023 PKD2L1Q9P0L9 805 aa23.56■■□□□ 1.36
CLN3-240ENST00000631023 FAM86B1E9PN63 330 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 FAM86B2P0C5J1 330 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 ARP10275 920 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 CHMP4BP1P59074 171 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 SETQ01105 290 aaPredicted RBP23.55■■□□□ 1.36
CLN3-240ENST00000631023 PTPN11Q06124 597 aaPredicted RBP23.55■■□□□ 1.36
CLN3-240ENST00000631023 FAM47CQ5HY64 1035 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 TBCKQ8TEA7 893 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 GPR20Q99678 358 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 GJB4Q9NTQ9 266 aa23.55■■□□□ 1.36
CLN3-240ENST00000631023 MYH9P35579 1960 aaKnown RBP23.54■■□□□ 1.36
CLN3-240ENST00000631023 CCDC194A0A1B0GVG4 234 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 KIAA0355O15063 1070 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 SUPT20HL2P0C7V6 817 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 ZNF286BP0CG31 522 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 CIITAP33076 1130 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 SP4Q02446 784 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 NONOQ15233 471 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-240ENST00000631023 KAT2BQ92831 832 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 AGO4Q9HCK5 861 aaKnown RBP23.54■■□□□ 1.36
CLN3-240ENST00000631023 JPH1Q9HDC5 661 aaPredicted RBP23.54■■□□□ 1.36
CLN3-240ENST00000631023 NFASCO94856 1347 aa23.54■■□□□ 1.36
CLN3-240ENST00000631023 F2P00734 622 aa23.53■■□□□ 1.36
CLN3-240ENST00000631023 SH3RF1Q7Z6J0 888 aa23.53■■□□□ 1.36
CLN3-240ENST00000631023 FAM184AQ8NB25 1140 aa23.53■■□□□ 1.36
CLN3-240ENST00000631023 LTBP2Q14767 1821 aa23.53■■□□□ 1.36
CLN3-240ENST00000631023 IGLV3-22A0A075B6J6 115 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 TRIM43BA6NCK2 446 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 CD4P01730 458 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 KRT2P35908 639 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 PSEN2P49810 448 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 MFSD10Q14728 455 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 KIAA0753Q2KHM9 967 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 PRR16Q569H4 304 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 SEPT1Q8WYJ6 367 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 TRIM43Q96BQ3 446 aaPredicted RBP23.52■■□□□ 1.36
CLN3-240ENST00000631023 SLC9A2Q9UBY0 812 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 H3BRB1 525 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 LGALS2P05162 132 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 RAG1P15918 1043 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 C7orf31Q8N865 590 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 TMX3Q96JJ7 454 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 ZNF577Q9BSK1 485 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 C16orf70Q9BSU1 422 aa23.52■■□□□ 1.36
CLN3-240ENST00000631023 TUT1Q9H6E5 874 aaKnown RBP23.52■■□□□ 1.36
CLN3-240ENST00000631023 ZNF215Q9UL58 517 aaPredicted RBP23.52■■□□□ 1.36
CLN3-240ENST00000631023 WDR81Q562E7 1941 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 HAS3O00219 553 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 IPO5O00410 1097 aaKnown RBP23.51■■□□□ 1.35
CLN3-240ENST00000631023 MMP1P03956 469 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 MAGEA10P43363 369 aaPredicted RBP23.51■■□□□ 1.35
CLN3-240ENST00000631023 KRT40Q6A162 431 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 CHRDL2Q6WN34 429 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 SESTD1Q86VW0 696 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 C8orf76Q96K31 380 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 TRPV6Q9H1D0 765 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 TBX21Q9UL17 535 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 KIF3AQ9Y496 699 aa23.51■■□□□ 1.35
CLN3-240ENST00000631023 B4GALT4O60513 344 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 TCF7P36402 384 aaPredicted RBP23.5■■□□□ 1.35
CLN3-240ENST00000631023 FOSBP53539 338 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 MDM2Q00987 491 aaPredicted RBP23.5■■□□□ 1.35
CLN3-240ENST00000631023 SAFBQ15424 915 aaKnown RBP eCLIP23.5■■□□□ 1.35
CLN3-240ENST00000631023 INF2Q27J81 1249 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 UTP14CQ5TAP6 766 aaKnown RBP23.5■■□□□ 1.35
CLN3-240ENST00000631023 OXER1Q8TDS5 423 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 GDF15Q99988 308 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 TBC1D22BQ9NU19 505 aa23.5■■□□□ 1.35
CLN3-240ENST00000631023 TRIOBPQ9H2D6 2365 aa23.49■■□□□ 1.35
CLN3-240ENST00000631023 CD2BP2O95400 341 aaKnown RBP23.49■■□□□ 1.35
CLN3-240ENST00000631023 ITGB3BPQ13352 177 aaPredicted RBP23.49■■□□□ 1.35
CLN3-240ENST00000631023 MOXD1Q6UVY6 613 aa23.49■■□□□ 1.35
CLN3-240ENST00000631023 PIK3AP1Q6ZUJ8 805 aa23.49■■□□□ 1.35
CLN3-240ENST00000631023 TRMT13Q9NUP7 481 aaKnown RBP23.49■■□□□ 1.35
CLN3-240ENST00000631023 TCEAL9Q9UHQ7 104 aa23.49■■□□□ 1.35
CLN3-240ENST00000631023 COLQQ9Y215 455 aaPredicted RBP23.49■■□□□ 1.35
CLN3-240ENST00000631023 NOD1Q9Y239 953 aa23.49■■□□□ 1.35
CLN3-240ENST00000631023 CYP3A7-CYP3A51PA0A087WV96 503 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 GSTTP1A0A1W2PQM5 241 aa23.48■■□□□ 1.35
CLN3-240ENST00000631023 TIMP1P01033 207 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms