RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ITIH6Q6UXX5 1313 aa9.63□□□□□ -0.87
VCL-206ENST00000623461 RPAP1Q9BWH6 1393 aaPredicted RBP9.63□□□□□ -0.87
VCL-206ENST00000623461 STAM2O75886 525 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 PSMC2P35998 433 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 CRLF3Q8IUI8 442 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ICA1LQ8NDH6 482 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ZC3H15Q8WU90 426 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 SGSM3Q96HU1 749 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 TBK1Q9UHD2 729 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ARAP3Q8WWN8 1544 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 HSPA8P11142 646 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 PYGBP11216 843 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 CYP2J2P51589 502 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 POLA2Q14181 598 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 TEDDM1Q5T9Z0 273 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 CYP4F22Q6NT55 531 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 PPP4R3CPQ6ZMV5 832 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 SPATA4Q8NEY3 305 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 CYTH2Q99418 400 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 MID2Q9UJV3 735 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ZBTB21Q9ULJ3 1066 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 NIP7Q9Y221 180 aaKnown RBP eCLIP9.62□□□□□ -0.87
VCL-206ENST00000623461 NOC2LQ9Y3T9 749 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 SH2B2O14492 632 aaPredicted RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 PLS3P13797 630 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 RINT1Q6NUQ1 792 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 TGS1Q96RS0 853 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 TRIM56Q9BRZ2 755 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 MAN1A2O60476 641 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 COBLO75128 1261 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 PRDM1O75626 825 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 HSPA9P38646 679 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 CENPUQ71F23 418 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 OTUD6AQ7L8S5 288 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ORC6Q9Y5N6 252 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 SGK1O00141 431 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 AGTP01019 485 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 HARSP12081 509 aaKnown RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 MAPK4P31152 587 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ART3Q13508 389 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 C1orf146Q5VVC0 180 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 TMEM154Q6P9G4 183 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 HOMEZQ8IX15 550 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 C1orf112Q9NSG2 853 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 AATKQ6ZMQ8 1374 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 CHMP2AO43633 222 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 GPC4O75487 556 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 CIAO1O76071 339 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 GAP43P17677 238 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ANKRD27Q96NW4 1050 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 BIN2Q9UBW5 565 aaPredicted RBP9.62□□□□□ -0.87
VCL-206ENST00000623461 STK36Q9NRP7 1315 aa9.62□□□□□ -0.87
VCL-206ENST00000623461 ATP1A1P05023 1023 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 NSFP46459 744 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 KRT81Q14533 505 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.61□□□□□ -0.876e-7■■■□□ 15.4
VCL-206ENST00000623461 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 WDR19Q8NEZ3 1342 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 FGGP02679 453 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 INPP1P49441 399 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 FSCBQ5H9T9 825 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 SPATA21Q7Z572 469 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 SESTD1Q86VW0 696 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 SCYL1Q96KG9 808 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 CSRNP1Q96S65 589 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 FUT8Q9BYC5 575 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 CHCHD3Q9NX63 227 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 FOXP2O15409 715 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 POLR2BP30876 1174 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 TFAP4Q01664 338 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 PARP10Q53GL7 1025 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 CMTR1Q8N1G2 835 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 LRRC43Q8N309 656 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 UPF3AQ9H1J1 476 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 SNX12Q9UMY4 172 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 NR2F2P24468 414 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 STX1BP61266 288 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 CYFIP2Q96F07 1278 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 BEGAINQ9BUH8 593 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 RFX7Q2KHR2 1363 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 UHRF1BP1LA0JNW5 1464 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 MBD5Q9P267 1494 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 PDE6AP16499 860 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 DAB2IPQ5VWQ8 1189 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 MAML1Q92585 1016 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 SETDB2Q96T68 719 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 TRPC6Q9Y210 931 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 ABCC10Q5T3U5 1492 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 RASA4BC9J798 803 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 RASA4O43374 803 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 GGPS1O95749 300 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 ALKBH5Q6P6C2 394 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 CYB5D1Q6P9G0 228 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 WDR75Q8IWA0 830 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 LRRC59Q96AG4 307 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 VCPKMTQ9H867 229 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 ZC4H2Q9NQZ6 224 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 TRAF3IP3Q9Y228 551 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 ZC3H13Q5T200 1668 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 CCT8L1PA6NM43 557 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms