RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 VTI1AQ96AJ9 217 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 GPRASP2Q96D09 838 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 C8orf76Q96K31 380 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 AGO4Q9HCK5 861 aaKnown RBP15.36■□□□□ 0.05
LINC00540-202ENST00000616974 Q9Y3F1 56 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 CYP3A4P08684 503 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 ZNF76P36508 570 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 TLE2Q04725 743 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 CUL4AQ13619 759 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 LETM2Q2VYF4 491 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 GNPTABQ3T906 1256 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 FBXO18Q8NFZ0 1043 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 BICD2Q8TD16 824 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 GPR20Q99678 358 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 MLXIPQ9HAP2 919 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 SPC25Q9HBM1 224 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 H0YGN5 161 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 MSH4O15457 936 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 KRT2P35908 639 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 PPTC7Q8NI37 304 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 ZBTB10Q96DT7 871 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 TRPV6Q9H1D0 765 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 TRMT13Q9NUP7 481 aaKnown RBP15.35■□□□□ 0.05
LINC00540-202ENST00000616974 LOXHD1Q8IVV2 1947 aa15.35■□□□□ 0.05
LINC00540-202ENST00000616974 GSTTP1A0A1W2PQM5 241 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 MOXD2PA6NHM9 499 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 NKRFO15226 690 aaKnown RBP eCLIP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 TGFB3P10600 412 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 ATP2B1P20020 1258 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 ZNF200P98182 395 aaPredicted RBP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 SNX17Q15036 470 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 NBPF20Q3BBV1 942 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 METTL7BQ6UX53 244 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 FAM184AQ8NB25 1140 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 PCSK9Q8NBP7 692 aaKnown RBP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 EMID1Q96A84 441 aaPredicted RBP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 GLT1D1Q96MS3 346 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 CTAGE1Q96RT6 745 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 PCYT2Q99447 389 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 C16orf70Q9BSU1 422 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 TSEN34Q9BSV6 310 aaKnown RBP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 GLT8D2Q9H1C3 349 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 EVI5O60447 810 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 STAM2O75886 525 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 CIITAP33076 1130 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 CPT1AP50416 773 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 ITGA7Q13683 1181 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 NONOQ15233 471 aaKnown RBP eCLIP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 UTP14CQ5TAP6 766 aaKnown RBP15.34■□□□□ 0.05
LINC00540-202ENST00000616974 XRRA1Q6P2D8 792 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 NLRX1Q86UT6 975 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 WASF1Q92558 559 aa15.34■□□□□ 0.05
LINC00540-202ENST00000616974 UMODL1Q5DID0 1318 aa15.33■□□□□ 0.05
LINC00540-202ENST00000616974 MYO9BQ13459 2157 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 CCDC194A0A1B0GVG4 234 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 TRIM43BA6NCK2 446 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 K7ELQ4 463 aaPredicted RBP15.33■□□□□ 0.04
LINC00540-202ENST00000616974 LGALS2P05162 132 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 CDK7P50613 346 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 LAMC2Q13753 1193 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 POTEDQ86YR6 584 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 TRIM43Q96BQ3 446 aaPredicted RBP15.33■□□□□ 0.04
LINC00540-202ENST00000616974 SENP7Q9BQF6 1050 aa15.33■□□□□ 0.04
LINC00540-202ENST00000616974 IPO5O00410 1097 aaKnown RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 HOXD8P13378 290 aaPredicted RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 TCF7P36402 384 aaPredicted RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 HMGN5P82970 282 aaKnown RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 FAAP100Q0VG06 881 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 TRMT1LQ7Z2T5 733 aaKnown RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 B4GALT4O60513 344 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 CCNT1O60563 726 aaKnown RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 XBP1P17861 261 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 MARK3P27448 753 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 NEDD9Q14511 834 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 KRT25Q7Z3Z0 450 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 WNT8BQ93098 351 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 ZNF577Q9BSK1 485 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 EHMT1Q9H9B1 1298 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 JPH1Q9HDC5 661 aaPredicted RBP15.32■□□□□ 0.04
LINC00540-202ENST00000616974 PDLIM7Q9NR12 457 aa15.32■□□□□ 0.04
LINC00540-202ENST00000616974 ARVCFO00192 962 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 CHMP2AO43633 222 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 F2P00734 622 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 MCM2P49736 904 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 DGKDQ16760 1214 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 KIAA0753Q2KHM9 967 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 GALNT17Q6IS24 598 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 FAM126BQ8IXS8 530 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 SLC43A3Q8NBI5 491 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 ETNPPLQ8TBG4 499 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 HAS1Q92839 578 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 RNPEPQ9H4A4 650 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 PRDM5Q9NQX1 630 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 SMC3Q9UQE7 1217 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 SPTBN5Q9NRC6 3674 aaKnown RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 NOP56O00567 594 aaKnown RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 CYP2C9P11712 490 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 TOB1P50616 345 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 ACTR2P61160 394 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 TRIM29Q14134 588 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms