RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PLTPP55058 493 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 FAM153CQ494X1 144 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 MFSD14BQ5SR56 506 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 GUF1Q8N442 669 aaKnown RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 ATP6V1G3Q96LB4 118 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 SRP68Q9UHB9 627 aaKnown RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 FAM153AQ9UHL3 310 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 RASAL2Q9UJF2 1139 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 DNM3Q9UQ16 869 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 GFPT2O94808 682 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 CDK8P49336 464 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 CLNS1AP54105 237 aaKnown RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 FUT2Q10981 343 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 HS2ST1Q7LGA3 356 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 CUL5Q93034 780 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 CTTNBP2NLQ9P2B4 639 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 AMACRQ9UHK6 382 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 HMGB1P1B2RPK0 211 aaPredicted RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 RAD51CO43502 376 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 CCDC172P0C7W6 258 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 ACTN1P12814 892 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 GUCY2CP25092 1073 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 STAT1P42224 750 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 MTMR3Q13615 1198 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 GLE1Q53GS7 698 aaKnown RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 CLEC10AQ8IUN9 316 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 ZNF507Q8TCN5 953 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 TCP11Q8WWU5 503 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 TOPAZ1Q8N9V7 1692 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 STXBP3O00186 592 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 RGS16O15492 202 aaPredicted RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 COASYQ13057 564 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 KCTD1Q719H9 257 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 SPATS2Q86XZ4 545 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 ZNF473Q8WTR7 871 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 SLC4A9Q96Q91 983 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 C7orf25Q9BPX7 421 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 NT5C3AQ9H0P0 336 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 CEP72Q9P209 647 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 ZNF219Q9P2Y4 722 aaPredicted RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 ATP6V0A2Q9Y487 856 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 CHD2O14647 1828 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 NPHP3-ACAD11A0A0J9YXS1 232 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 DAPK3O43293 454 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 PRPF6O94906 941 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 GNA14O95837 355 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 PLCG2P16885 1265 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 CYP2J2P51589 502 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 MAGOHP61326 146 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 HDLBPQ00341 1268 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 C12orf60Q5U649 245 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 RNF10Q8N5U6 811 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 MAGOHBQ96A72 148 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 SHISA4Q96DD7 197 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 CEP95Q96GE4 821 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 PKD2L1Q9P0L9 805 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 MTRF1LQ9UGC7 380 aaKnown RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 HDAC9Q9UKV0 1011 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 HLA-DOAP06340 250 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 GJC1P36383 396 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 KCNH2Q12809 1159 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 DENND2CQ68D51 928 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.78□□□□□ -0.2
LIG1-221ENST00000613670 PACSIN1Q9BY11 444 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 CD2APQ9Y5K6 639 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 RGPD2P0DJD1 1756 aa13.78□□□□□ -0.2
LIG1-221ENST00000613670 PLA2G4BP0C869 781 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 MYCT1Q8N699 235 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 ANKRD42Q8N9B4 389 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 KIAA0895Q8NCT3 520 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 AENQ8WTP8 325 aaKnown RBP13.77□□□□□ -0.2
LIG1-221ENST00000613670 RAD54LQ92698 747 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 TACO1Q9BSH4 297 aaKnown RBP13.77□□□□□ -0.2
LIG1-221ENST00000613670 FBXL5Q9UKA1 691 aa13.77□□□□□ -0.2
LIG1-221ENST00000613670 A0A087X0T9 212 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 PVALEFA0A1B0GWK0 134 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 SFI1A8K8P3 1242 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 FAM228BP0C875 321 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 MDH1P40925 334 aaKnown RBP13.77□□□□□ -0.21
LIG1-221ENST00000613670 CETN1Q12798 172 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 MEA1Q16626 185 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 HIBCHQ6NVY1 386 aaPredicted RBP13.77□□□□□ -0.21
LIG1-221ENST00000613670 HOOK3Q86VS8 718 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 TAF1DQ9H5J8 278 aaPredicted RBP13.77□□□□□ -0.21
LIG1-221ENST00000613670 POTEB3A0JP26 581 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 POTECB2RU33 542 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 SPOPO43791 374 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 FGGP02679 453 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 POTEBQ6S5H4 581 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 MARCH10Q8NA82 808 aaPredicted RBP13.77□□□□□ -0.21
LIG1-221ENST00000613670 TLR10Q9BXR5 811 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 NSRP1Q9H0G5 558 aaKnown RBP13.77□□□□□ -0.21
LIG1-221ENST00000613670 EPN3Q9H201 632 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 SWAP70Q9UH65 585 aa13.77□□□□□ -0.21
LIG1-221ENST00000613670 ABCC6O95255 1503 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 SART1O43290 800 aaKnown RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 CALUO43852 315 aaPredicted RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 KLRC4O43908 158 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 LRRN2O75325 713 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 ADCY1Q08828 1119 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms