RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 POLR3AO14802 1390 aaPredicted RBP6.31□□□□□ -1.4
LINC00540-201ENST00000611481 ADAMTS20P59510 1910 aa6.31□□□□□ -1.4
LINC00540-201ENST00000611481 ANKRD36BQ8N2N9 1353 aa6.31□□□□□ -1.4
LINC00540-201ENST00000611481 SIGLEC6O43699 453 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 FAM160A1Q05DH4 1040 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 SNW1Q13573 536 aaKnown RBP6.3□□□□□ -1.4
LINC00540-201ENST00000611481 SPATS1Q496A3 300 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 CRELD1Q96HD1 420 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 CAPNS2Q96L46 248 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 ADAM7Q9H2U9 754 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 C14orf93Q9H972 538 aaKnown RBP6.3□□□□□ -1.4
LINC00540-201ENST00000611481 GMIPQ9P107 970 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 GPR55Q9Y2T6 319 aaPredicted RBP6.3□□□□□ -1.4
LINC00540-201ENST00000611481 PCDHA5Q9Y5H7 936 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 KDM6AO15550 1401 aaPredicted RBP6.3□□□□□ -1.4
LINC00540-201ENST00000611481 CPSF1Q10570 1443 aaKnown RBP6.3□□□□□ -1.4
LINC00540-201ENST00000611481 TOGARAM1Q9Y4F4 1720 aa6.3□□□□□ -1.4
LINC00540-201ENST00000611481 LOC105371045A0A1W2PR82 267 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 BUB1BO60566 1050 aaPredicted RBP6.29□□□□□ -1.4
LINC00540-201ENST00000611481 PRKCAP17252 672 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 CYP4F8P98187 520 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 CBX2Q14781 532 aaPredicted RBP6.29□□□□□ -1.4
LINC00540-201ENST00000611481 KIR3DS1Q14943 382 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 CWF19L2Q2TBE0 894 aaKnown RBP6.29□□□□□ -1.4
LINC00540-201ENST00000611481 CYP4F22Q6NT55 531 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 TMC4Q7Z404 712 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 TIAM2Q8IVF5 1701 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 RGS22Q8NE09 1264 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 FBXO27Q8NI29 283 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 DOT1LQ8TEK3 1739 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 SLIT3O75094 1523 aa6.29□□□□□ -1.4
LINC00540-201ENST00000611481 THSD7BQ9C0I4 1608 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 A0A0C4DFX4 3053 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 A0A1W2PQ45 241 aaPredicted RBP6.28□□□□□ -1.4
LINC00540-201ENST00000611481 A0A1W2PQY0 241 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 NUDT19A8MXV4 375 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 MINDY4BA8MYZ0 360 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 CA12O43570 354 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 ECE1P42892 770 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 PLP2Q04941 152 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 EFEMP1Q12805 493 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 SLCO6A1Q86UG4 719 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 ARHGEF25Q86VW2 580 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 AEBP1Q8IUX7 1158 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 NLGN1Q8N2Q7 840 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 TP53I13Q8NBR0 393 aaPredicted RBP6.28□□□□□ -1.4
LINC00540-201ENST00000611481 PRDM14Q9GZV8 571 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 TNFRSF12AQ9NP84 129 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 CHST7Q9NS84 486 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 ACSL6Q9UKU0 697 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 ROCK1Q13464 1354 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 C4BP0C0L5 1744 aa6.28□□□□□ -1.4
LINC00540-201ENST00000611481 PATL2C9JE40 543 aaKnown RBP6.27□□□□□ -1.41
LINC00540-201ENST00000611481 CLEC3AO75596 197 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 HMGB2P26583 209 aaKnown RBP6.27□□□□□ -1.41
LINC00540-201ENST00000611481 CHRNA5P30532 468 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 CAP1Q01518 475 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 ZXDCQ2QGD7 858 aaPredicted RBP6.27□□□□□ -1.41
LINC00540-201ENST00000611481 NUP43Q8NFH3 380 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 BDH2Q9BUT1 245 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 CDADC1Q9BWV3 514 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 ERVK13-1Q9NX77 482 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 UBR3Q6ZT12 1888 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 TAF1LQ8IZX4 1826 aa6.27□□□□□ -1.41
LINC00540-201ENST00000611481 NSD3Q9BZ95 1437 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 MEGF6O75095 1541 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 TLR3O15455 904 aaKnown RBP6.26□□□□□ -1.41
LINC00540-201ENST00000611481 DDNO94850 711 aaPredicted RBP6.26□□□□□ -1.41
LINC00540-201ENST00000611481 ATE1O95260 518 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 PFKLP17858 780 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 GARTP22102 1010 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 BMP8BP34820 402 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 CCNFP41002 786 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 KCNC1P48547 511 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 NCKAP1LP55160 1127 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 TMCO4Q5TGY1 634 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 CDCP2Q5VXM1 449 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 RPTNQ6XPR3 784 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 EAF1Q96JC9 268 aaPredicted RBP6.26□□□□□ -1.41
LINC00540-201ENST00000611481 FAM161BQ96MY7 647 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 TMPRSS5Q9H3S3 457 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 MINPP1Q9UNW1 487 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 PCDHB14Q9Y5E9 798 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 TRIOBPQ9H2D6 2365 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 PALLDQ8WX93 1383 aa6.26□□□□□ -1.41
LINC00540-201ENST00000611481 FFAR3O14843 346 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 ZNF205O95201 554 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 POLR2BP30876 1174 aaKnown RBP6.25□□□□□ -1.41
LINC00540-201ENST00000611481 MAP2K2P36507 400 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 NR1I3Q14994 352 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 OVOS1Q6IE37 1185 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 CDK19Q9BWU1 502 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 LRRC3Q9BY71 257 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 TAF1DQ9H5J8 278 aaPredicted RBP6.25□□□□□ -1.41
LINC00540-201ENST00000611481 CNNM2Q9H8M5 875 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 BRMS1Q9HCU9 246 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 CCDC88AQ3V6T2 1871 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 SZT2Q5T011 3432 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 C4AP0C0L4 1744 aa6.25□□□□□ -1.41
LINC00540-201ENST00000611481 IRS2Q9Y4H2 1338 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms