RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 PRDM5Q9NQX1 630 aaPredicted RBP16.39■□□□□ 0.21
USE1-210ENST00000601662 RTEL1Q9NZ71 1219 aa16.39■□□□□ 0.21
USE1-210ENST00000601662 MRVI1Q9Y6F6 885 aa16.39■□□□□ 0.21
USE1-210ENST00000601662 NKRFO15226 690 aaKnown RBP eCLIP16.38■□□□□ 0.21
USE1-210ENST00000601662 TOB1P50616 345 aaPredicted RBP16.38■□□□□ 0.21
USE1-210ENST00000601662 ARHGAP4P98171 946 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 TLE2Q04725 743 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 DNM1Q05193 864 aaKnown RBP16.38■□□□□ 0.21
USE1-210ENST00000601662 CSPP1Q1MSJ5 1256 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 TTC38Q5R3I4 469 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 FAM173BQ6P4H8 233 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 CCDC62Q6P9F0 684 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 MOXD1Q6UVY6 613 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 POLR3EQ9NVU0 708 aa16.38■□□□□ 0.21
USE1-210ENST00000601662 NCLP19338 710 aaKnown RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 ATP2B1P20020 1258 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 ZNF76P36508 570 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 CHMP4BP1P59074 171 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 LETM2Q2VYF4 491 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 FOXD4L6Q3SYB3 417 aaPredicted RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 PPP4R3AQ6IN85 833 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 FOXD4L3Q6VB84 417 aaPredicted RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 PGBD1Q96JS3 809 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 TFIP11Q9UBB9 837 aaKnown RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 PRKAG2Q9UGJ0 569 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 DDX41Q9UJV9 622 aaKnown RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 COLQQ9Y215 455 aaPredicted RBP16.37■□□□□ 0.21
USE1-210ENST00000601662 DNAH12Q6ZR08 3092 aa16.37■□□□□ 0.21
USE1-210ENST00000601662 CYP3A7-CYP3A51PA0A087WV96 503 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 FAM205CA6NFA0 338 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 CCNT1O60563 726 aaKnown RBP16.36■□□□□ 0.21
USE1-210ENST00000601662 STAM2O75886 525 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 RGS20O76081 388 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 BAG4O95429 457 aaKnown RBP16.36■□□□□ 0.21
USE1-210ENST00000601662 YEATS4O95619 227 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 GH1P01241 217 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 CYP3A7P24462 503 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 CIITAP33076 1130 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 CPT1AP50416 773 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 PSMC6P62333 389 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 NKX3-2P78367 333 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 SNX17Q15036 470 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 BRDTQ58F21 947 aaPredicted RBP16.36■□□□□ 0.21
USE1-210ENST00000601662 PCNX4Q63HM2 1172 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 AFG1LQ8WV93 481 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 CRYGNQ8WXF5 182 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 ELP1O95163 1332 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 FRMPD4Q14CM0 1322 aa16.36■□□□□ 0.21
USE1-210ENST00000601662 A0A0U1RQG5 324 aaPredicted RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 GOLGA6L22H0YM25 854 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 LAD1O00515 517 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 NASPP49321 788 aaPredicted RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 MRPS9P82933 396 aaKnown RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 MDM2Q00987 491 aaPredicted RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 ARHGAP1Q07960 439 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 ZNF174Q15697 407 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 SH3RF1Q7Z6J0 888 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 DHX37Q8IY37 1157 aaKnown RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 PPP1R13LQ8WUF5 828 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 USP28Q96RU2 1077 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 RCOR1Q9UKL0 485 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 PCDHB6Q9Y5E3 794 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 MORC2Q9Y6X9 1032 aaPredicted RBP16.35■□□□□ 0.21
USE1-210ENST00000601662 TRIOBPQ9H2D6 2365 aa16.35■□□□□ 0.21
USE1-210ENST00000601662 DCDC2CA8MYV0 355 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 ARVCFO00192 962 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 MAFGO15525 162 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 CABYRO75952 493 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 MCM7P33993 719 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 MAGEA10P43363 369 aaPredicted RBP16.34■□□□□ 0.21
USE1-210ENST00000601662 ITGA7Q13683 1181 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 SLC39A14Q15043 492 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 STK38Q15208 465 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 GNPTABQ3T906 1256 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 C1orf53Q5VUE5 145 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 NIPA1Q7RTP0 329 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 KCNG4Q8TDN1 519 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 SPATA32Q96LK8 384 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 LBHD1Q9BQE6 289 aaPredicted RBP16.34■□□□□ 0.21
USE1-210ENST00000601662 PDLIM7Q9NR12 457 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 CLIC4Q9Y696 253 aa16.34■□□□□ 0.21
USE1-210ENST00000601662 KIAA1217Q5T5P2 1943 aa16.33■□□□□ 0.21
USE1-210ENST00000601662 A6NJR5 290 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 GGPS1O95749 300 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 CLTBP09497 229 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 PURAQ00577 322 aaKnown RBP16.33■□□□□ 0.2
USE1-210ENST00000601662 SP2Q02086 613 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 CEBPZQ03701 1054 aaKnown RBP16.33■□□□□ 0.2
USE1-210ENST00000601662 LAMC2Q13753 1193 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 Q4G0T1 1027 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 CEP55Q53EZ4 464 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 KCNV1Q6PIU1 500 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 LINC00301Q8NCQ3 95 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 MBOAT7Q96N66 472 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 MXRA8Q9BRK3 442 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 MTG1Q9BT17 334 aaPredicted RBP16.33■□□□□ 0.2
USE1-210ENST00000601662 MLXIPQ9HAP2 919 aa16.33■□□□□ 0.2
USE1-210ENST00000601662 TMEM39AQ9NV64 488 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms