RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CALML4Q96GE6 196 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 DDX47Q9H0S4 455 aaKnown RBP20.18■□□□□ 0.82
UPF1-210ENST00000600689 SLC40A1Q9NP59 571 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 IL17RBQ9NRM6 502 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 ANKIB1Q9P2G1 1089 aa20.18■□□□□ 0.82
UPF1-210ENST00000600689 DUOX1Q9NRD9 1551 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 FLT1P17948 1338 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 OPLAHO14841 1288 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 SCP2P22307 547 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 TAF4BQ92750 862 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 DPH5Q9H2P9 285 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 NOVA2Q9UNW9 492 aaKnown RBP20.17■□□□□ 0.82
UPF1-210ENST00000600689 A0A087X0T9 212 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 PHF20L1A8MW92 1017 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 RPSAP08865 295 aaKnown RBP20.17■□□□□ 0.82
UPF1-210ENST00000600689 FAM228BP0C875 321 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 FLT3P36888 993 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 ZSCAN29Q8IWY8 852 aaPredicted RBP20.17■□□□□ 0.82
UPF1-210ENST00000600689 NUDT12Q9BQG2 462 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 CRNKL1Q9BZJ0 848 aaKnown RBP20.17■□□□□ 0.82
UPF1-210ENST00000600689 GDF3Q9NR23 364 aa20.17■□□□□ 0.82
UPF1-210ENST00000600689 TNRC6CQ9HCJ0 1690 aaKnown RBP20.16■□□□□ 0.82
UPF1-210ENST00000600689 GCOM1H8Y6P7 765 aaPredicted RBP20.16■□□□□ 0.82
UPF1-210ENST00000600689 MYZAPP0CAP1 466 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 SLC9C1Q4G0N8 1177 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 SFMBT2Q5VUG0 894 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 UBA5Q9GZZ9 404 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 LRRC4CQ9HCJ2 640 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 LRRC4BQ9NT99 713 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 A0A1W2PQJ5 194 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 SMCO2A6NFE2 343 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 TLR2O60603 784 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 ERVK-9P63128 1117 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 GRIK5Q16478 980 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 MDM1Q8TC05 714 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 TBCKQ8TEA7 893 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 N4BP2L2Q92802 583 aaPredicted RBP20.16■□□□□ 0.82
UPF1-210ENST00000600689 SUFUQ9UMX1 484 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 TSPY3P0CV98 308 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 TSPY8P0CW00 308 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 PRLRP16471 622 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 HSD17B3P37058 310 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 KCNMA1Q12791 1236 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 ANKRD2Q9GZV1 360 aa20.16■□□□□ 0.82
UPF1-210ENST00000600689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.16■□□□□ 0.82
UPF1-210ENST00000600689 FSBPO95073 299 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 AMPD3Q01432 767 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 ITGB3BPQ13352 177 aaPredicted RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 FAM83BQ5T0W9 1011 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 TRAPPC3LQ5T215 181 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 USP17L2Q6R6M4 530 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 TBC1D31Q96DN5 1066 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 MMTAG2Q9BU76 263 aaKnown RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 NEUROG2Q9H2A3 272 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 GSCP56915 257 aaPredicted RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 HGSNATQ68CP4 663 aa20.15■□□□□ 0.82
UPF1-210ENST00000600689 TMED8Q6PL24 325 aaPredicted RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 CCDC84Q86UT8 332 aaPredicted RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 UHMK1Q8TAS1 419 aaKnown RBP20.15■□□□□ 0.82
UPF1-210ENST00000600689 CDK17Q00537 523 aa20.14■□□□□ 0.82
UPF1-210ENST00000600689 KLHL30Q0D2K2 578 aa20.14■□□□□ 0.82
UPF1-210ENST00000600689 STXBP3O00186 592 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 MARCH6O60337 910 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 ACTN1P12814 892 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 EPS15P42566 896 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 KCNK18Q7Z418 384 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 VCPKMTQ9H867 229 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 DDX20Q9UHI6 824 aaKnown RBP20.14■□□□□ 0.81
UPF1-210ENST00000600689 MAD2L2Q9UI95 211 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 COL24A1Q17RW2 1714 aa20.14■□□□□ 0.81
UPF1-210ENST00000600689 KLRF2D3W0D1 207 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 DNM1LO00429 736 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 FAM107AO95990 144 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 NONOQ15233 471 aaKnown RBP eCLIP20.13■□□□□ 0.81
UPF1-210ENST00000600689 DIXDC1Q155Q3 683 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 CENPPQ6IPU0 288 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 C7orf25Q9BPX7 421 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 FGFBP2Q9BYJ0 223 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 CELF4Q9BZC1 486 aaKnown RBP20.13■□□□□ 0.81
UPF1-210ENST00000600689 CNOT8Q9UFF9 292 aaKnown RBP20.13■□□□□ 0.81
UPF1-210ENST00000600689 FBXL5Q9UKA1 691 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 TLDC2A0PJX2 215 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 FIGNQ5HY92 759 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 CPLX4Q7Z7G2 160 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 DZIP1Q86YF9 867 aaKnown RBP20.13■□□□□ 0.81
UPF1-210ENST00000600689 AMACRQ9UHK6 382 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 IRS2Q9Y4H2 1338 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 DAPK3O43293 454 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 ITGA4P13612 1032 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 NF2P35240 595 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 COPB2P35606 906 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 ITIH3Q06033 890 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 DDX12PQ92771 950 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 GOPCQ9HD26 462 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 ODF2LQ9ULJ1 636 aa20.13■□□□□ 0.81
UPF1-210ENST00000600689 CHUKO15111 745 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 TDP2O95551 362 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 MAGOHP61326 146 aaKnown RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 TNNC1P63316 161 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 GRB10Q13322 594 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms