RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 LBHD1Q9BQE6 289 aaPredicted RBP18.44■□□□□ 0.54
TRIM28-213ENST00000598355 C16orf70Q9BSU1 422 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 KATNAL1Q9BW62 490 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 SZT2Q5T011 3432 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 IGLV3-22A0A075B6J6 115 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 ATP9AO75110 1047 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 ZNF286BP0CG31 522 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 RAG1P15918 1043 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 HOXC8P31273 242 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 FXR1P51114 621 aaKnown RBP eCLIP18.43■□□□□ 0.544e-6■■■□□ 17
TRIM28-213ENST00000598355 ST3GAL1Q11201 340 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 CEP55Q53EZ4 464 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 JAKMIP3Q5VZ66 844 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 CYFIP1Q7L576 1253 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 TDHQ8IZJ6 230 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 AIFM3Q96NN9 605 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 CTAGE1Q96RT6 745 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 GPR20Q99678 358 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 NOC4LQ9BVI4 516 aaKnown RBP18.43■□□□□ 0.54
TRIM28-213ENST00000598355 UBE2OQ9C0C9 1292 aaKnown RBP18.43■□□□□ 0.54
TRIM28-213ENST00000598355 TRPV6Q9H1D0 765 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 MLXIPQ9HAP2 919 aa18.43■□□□□ 0.54
TRIM28-213ENST00000598355 MEIS1O00470 390 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 LGALS2P05162 132 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 PSEN2P49810 448 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 MFSD5Q6N075 450 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 CYP2W1Q8TAV3 490 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 C22orf23Q9BZE7 217 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 KCNH7Q9NS40 1196 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 TRMT13Q9NUP7 481 aaKnown RBP18.42■□□□□ 0.54
TRIM28-213ENST00000598355 GTF2IRD1Q9UHL9 959 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 TELO2Q9Y4R8 837 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 MYH9P35579 1960 aaKnown RBP18.42■□□□□ 0.54
TRIM28-213ENST00000598355 NFASCO94856 1347 aa18.42■□□□□ 0.54
TRIM28-213ENST00000598355 TET1Q8NFU7 2136 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 FAM86B1E9PN63 330 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 EDIL3O43854 480 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 FAM86B2P0C5J1 330 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 SUPT20HL2P0C7V6 817 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 CIITAP33076 1130 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 MFSD10Q14728 455 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 LRIT3Q3SXY7 679 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 GALNT17Q6IS24 598 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 NSUN7Q8NE18 718 aaKnown RBP18.41■□□□□ 0.54
TRIM28-213ENST00000598355 RASGRP4Q8TDF6 673 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 PCDHA4Q9UN74 947 aa18.41■□□□□ 0.54
TRIM28-213ENST00000598355 NOP56O00567 594 aaKnown RBP18.4■□□□□ 0.54
TRIM28-213ENST00000598355 SORBS3O60504 671 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 FDPSP14324 419 aaKnown RBP18.4■□□□□ 0.54
TRIM28-213ENST00000598355 RBL2Q08999 1139 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 KIAA0753Q2KHM9 967 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 PHF20Q9BVI0 1012 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 WNT8AQ9H1J5 351 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 HIPK3Q9H422 1215 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 UMODL1Q5DID0 1318 aa18.4■□□□□ 0.54
TRIM28-213ENST00000598355 PITPNM1O00562 1244 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 ARP10275 920 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 EPHB4P54760 987 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 NLRP5P59047 1200 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 FPGSQ05932 587 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 ITGB3BPQ13352 177 aaPredicted RBP18.39■□□□□ 0.53
TRIM28-213ENST00000598355 GDF6Q6KF10 455 aaPredicted RBP18.39■□□□□ 0.53
TRIM28-213ENST00000598355 BLIDQ8IZY5 108 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 NECAB1Q8N987 351 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 PPP1R13LQ8WUF5 828 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 LENG9Q96B70 501 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 PPP1R12CQ9BZL4 782 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 AGO4Q9HCK5 861 aaKnown RBP18.39■□□□□ 0.53
TRIM28-213ENST00000598355 HDAC6Q9UBN7 1215 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 LIMCH1Q9UPQ0 1083 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 EMSYQ7Z589 1322 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 SIP14410 1827 aa18.39■□□□□ 0.53
TRIM28-213ENST00000598355 GSTTP1A0A1W2PQM5 241 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 H3BRB1 525 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 SETQ01105 290 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-213ENST00000598355 FAM47CQ5HY64 1035 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 TRIM50Q86XT4 487 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 IL27Q8NEV9 243 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 VWCEQ96DN2 955 aa18.38■□□□□ 0.53
TRIM28-213ENST00000598355 TUT1Q9H6E5 874 aaKnown RBP18.38■□□□□ 0.53
TRIM28-213ENST00000598355 JPH1Q9HDC5 661 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-213ENST00000598355 ORC3Q9UBD5 711 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-213ENST00000598355 LGR5O75473 907 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 CYP2C9P11712 490 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 CYP2C18P33260 490 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 TCF7P36402 384 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-213ENST00000598355 HIC1Q14526 733 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 C9orf50Q5SZB4 431 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 DHX38Q92620 1227 aaKnown RBP18.37■□□□□ 0.53
TRIM28-213ENST00000598355 TBC1D32Q96NH3 1257 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 SLC9A2Q9UBY0 812 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 GBF1Q92538 1859 aa18.37■□□□□ 0.53
TRIM28-213ENST00000598355 SOX1O00570 391 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-213ENST00000598355 DHX15O43143 795 aaKnown RBP18.36■□□□□ 0.53
TRIM28-213ENST00000598355 ATG7O95352 703 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 CSF2RAP15509 400 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 USP11P51784 963 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 ADAM17P78536 824 aa18.36■□□□□ 0.53
TRIM28-213ENST00000598355 PPIGQ13427 754 aaKnown RBP eCLIP18.36■□□□□ 0.533e-13■■□□□ 13.6
TRIM28-213ENST00000598355 RABEP1Q15276 862 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms