RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 KCNA10Q16322 511 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 IL17AQ16552 155 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 GNPTABQ3T906 1256 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 NLRX1Q86UT6 975 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 POTEDQ86YR6 584 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 AFG1LQ8WV93 481 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 KAT2BQ92831 832 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 GPR20Q99678 358 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 EHMT1Q9H9B1 1298 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 BRMS1Q9HCU9 246 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.01□□□□□ -0.49
LIG1-210ENST00000596332 NFASCO94856 1347 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 KIAA0100Q14667 2235 aaKnown RBP12.01□□□□□ -0.49
LIG1-210ENST00000596332 IGKV6D-21A0A0A0MT36 114 aa12□□□□□ -0.49
LIG1-210ENST00000596332 IPO5O00410 1097 aaKnown RBP12□□□□□ -0.49
LIG1-210ENST00000596332 CCNT1O60563 726 aaKnown RBP12□□□□□ -0.49
LIG1-210ENST00000596332 GH1P01241 217 aa12□□□□□ -0.49
LIG1-210ENST00000596332 PDCP20941 246 aa12□□□□□ -0.49
LIG1-210ENST00000596332 TRAPPC10P48553 1259 aa12□□□□□ -0.49
LIG1-210ENST00000596332 SOX10P56693 466 aa12□□□□□ -0.49
LIG1-210ENST00000596332 LAMC2Q13753 1193 aa12□□□□□ -0.49
LIG1-210ENST00000596332 ZNF174Q15697 407 aa12□□□□□ -0.49
LIG1-210ENST00000596332 METTL7BQ6UX53 244 aa12□□□□□ -0.49
LIG1-210ENST00000596332 CHAMP1Q96JM3 812 aa12□□□□□ -0.49
LIG1-210ENST00000596332 C16orf70Q9BSU1 422 aa12□□□□□ -0.49
LIG1-210ENST00000596332 FTOQ9C0B1 505 aaKnown RBP eCLIP12□□□□□ -0.49
LIG1-210ENST00000596332 PKD2L1Q9P0L9 805 aa12□□□□□ -0.49
LIG1-210ENST00000596332 DDX25Q9UHL0 483 aaKnown RBP12□□□□□ -0.49
LIG1-210ENST00000596332 VAV3Q9UKW4 847 aa12□□□□□ -0.49
LIG1-210ENST00000596332 PHF24Q9UPV7 400 aa12□□□□□ -0.49
LIG1-210ENST00000596332 VPS37CA5D8V6 355 aaPredicted RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 CCDC85CA6NKD9 419 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 H3BQV1 296 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 TFRCP02786 760 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 ASGR1P07306 291 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 MMP3P08254 477 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 ZSCAN22P10073 491 aaPredicted RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 GCFC2P16383 781 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 ZNF76P36508 570 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 PURAQ00577 322 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 BECN1Q14457 450 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 NEDD9Q14511 834 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 FSCN1Q16658 493 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 IFFO2Q5TF58 517 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 MCTP1Q6DN14 999 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 ABHD15Q6UXT9 468 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 DHX37Q8IY37 1157 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 ANKLE1Q8NAG6 615 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 SLC43A3Q8NBI5 491 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 OR6J1Q8NGC5 347 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 PPTC7Q8NI37 304 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 CDHR1Q96JP9 859 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 RIT2Q99578 217 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 ZNF577Q9BSK1 485 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 TSEN34Q9BSV6 310 aaKnown RBP11.99□□□□□ -0.49
LIG1-210ENST00000596332 TMEM106CQ9BVX2 250 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 DOCK5Q9H7D0 1870 aa11.99□□□□□ -0.49
LIG1-210ENST00000596332 HAS3O00219 553 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 EML1O00423 815 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 DNM1LO00429 736 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 TBX3O15119 743 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 PPFIA4O75335 1185 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 LGR5O75473 907 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 STBD1O95210 358 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 C6orf222P0C671 652 aaPredicted RBP11.98□□□□□ -0.49
LIG1-210ENST00000596332 ATP2B1P20020 1258 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 ATP4AP20648 1035 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 MCM7P33993 719 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 CDK7P50613 346 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 ACLYP53396 1101 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 SETQ01105 290 aaPredicted RBP11.98□□□□□ -0.49
LIG1-210ENST00000596332 HIC1Q14526 733 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 PTPAQ15257 358 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 GNASQ5JWF2 1037 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 TTC38Q5R3I4 469 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 CXCL17Q6UXB2 119 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 PAWRQ96IZ0 340 aaKnown RBP11.98□□□□□ -0.49
LIG1-210ENST00000596332 SPATA33Q96N06 139 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 UNC45AQ9H3U1 944 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 DNAH12Q6ZR08 3092 aa11.98□□□□□ -0.49
LIG1-210ENST00000596332 F13A1P00488 732 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 CAPN2P17655 700 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 RGS19P49795 217 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 ACTR2P61160 394 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 PTGDRQ13258 359 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 RILPL1Q5EBL4 403 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 BRAPQ7Z569 592 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 ARRDC4Q8NCT1 418 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 PPP1R13LQ8WUF5 828 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 FAM20AQ96MK3 541 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 CTAGE1Q96RT6 745 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 USP28Q96RU2 1077 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 AP5M1Q9H0R1 490 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 MLXIPQ9HAP2 919 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 TBC1D22BQ9NU19 505 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 SLC9A2Q9UBY0 812 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 CLIC4Q9Y696 253 aa11.97□□□□□ -0.49
LIG1-210ENST00000596332 A0A1W2PQ45 241 aaPredicted RBP11.96□□□□□ -0.49
LIG1-210ENST00000596332 A0A1W2PQY0 241 aa11.96□□□□□ -0.49
LIG1-210ENST00000596332 RBAK-RBAKDNI3L0D1 243 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms