RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 EDEM3Q9BZQ6 932 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 TSGA10Q9BZW7 698 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 DEFB129Q9H1M3 183 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CPVLQ9H3G5 476 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 SH2D4AQ9H788 454 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 EFCC1Q9HA90 598 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 TMEM260Q9NX78 707 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 PCDHA12Q9UN75 941 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 POLR2AP24928 1970 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 FOCADQ5VW36 1801 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 SOWAHDA6NJG2 315 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 EEF2P13639 858 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 TRIM21P19474 475 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 MAP3K9P80192 1104 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 ZBED6P86452 979 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 CDK17Q00537 523 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 SP3Q02447 781 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 PPP2R3AQ06190 1150 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 GOLGA8FQ08AF8 430 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 GOLGA8DPQ0D2H9 430 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 TBC1D8BQ0IIM8 1120 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 ELF2Q15723 593 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 CDC37Q16543 378 aaPredicted RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 CENPPQ6IPU0 288 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 FBXO11Q86XK2 927 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 KIAA0825Q8IV33 1275 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 SMAP1Q8IYB5 467 aaPredicted RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 GPR161Q8N6U8 529 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 ZNF507Q8TCN5 953 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 ERGIC2Q96RQ1 377 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 MMTAG2Q9BU76 263 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 NOC4LQ9BVI4 516 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 NUCKS1Q9H1E3 243 aaKnown RBP11.79□□□□□ -0.52
ZNF540-208ENST00000589857 HAUS4Q9H6D7 363 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 ARHGEF10LQ9HCE6 1279 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 PTPN22Q9Y2R2 807 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 PCDHA1Q9Y5I3 950 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 MRFAP1Q9Y605 127 aa11.79□□□□□ -0.52
ZNF540-208ENST00000589857 SPDYE3A6NKU9 549 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 USP17L10C9JJH3 530 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 TADA3O75528 432 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 TDP2O95551 362 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 FXR1P51114 621 aaKnown RBP eCLIP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 FAM193AP78312 1265 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 IKQ13123 557 aaPredicted RBP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 TNFAIP1Q13829 316 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 BMS1Q14692 1282 aaKnown RBP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 MAN2A1Q16706 1144 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 WHAMMP3Q1A5X7 153 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 QRICH1Q2TAL8 776 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 SYDE2Q5VT97 1194 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 RAD9BQ6WBX8 426 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 KCTD1Q719H9 257 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 ANKRD13AQ8IZ07 590 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 MYOCDQ8IZQ8 938 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 RABGGTAQ92696 567 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 PCMTD1Q96MG8 357 aaPredicted RBP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 FAM20AQ96MK3 541 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 CEP63Q96MT8 703 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 MBOAT7Q96N66 472 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 PLIN2Q99541 437 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 NAPGQ99747 312 aaPredicted RBP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 DUSP9Q99956 384 aaKnown RBP11.78□□□□□ -0.52
ZNF540-208ENST00000589857 ANO3Q9BYT9 981 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 GOPCQ9HD26 462 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 MAPK8IP1Q9UQF2 711 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 MYH1P12882 1939 aa11.78□□□□□ -0.52
ZNF540-208ENST00000589857 TRIM49BA6NDI0 452 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 KRT86O43790 486 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 SLC37A4O43826 429 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 NDUFA10O95299 355 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 BMP3P12645 472 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 NFIAQ12857 509 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 MCM6Q14566 821 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 KIF22Q14807 665 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 MEA1Q16626 185 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 UBE2SQ16763 222 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 Q4G0T1 1027 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 TMCO3Q6UWJ1 677 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 BTNL9Q6UXG8 535 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 IRF2BP1Q8IU81 584 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 MTMR14Q8NCE2 650 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 KIFC2Q96AC6 838 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 ARMC5Q96C12 935 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 WNK4Q96J92 1243 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 PNMA5Q96PV4 448 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 DESI2Q9BSY9 194 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 LUC7LQ9NQ29 371 aaKnown RBP11.77□□□□□ -0.53
ZNF540-208ENST00000589857 BLOC1S4Q9NUP1 217 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 FAM198AQ9UFP1 575 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 DDX41Q9UJV9 622 aaKnown RBP11.77□□□□□ -0.53
ZNF540-208ENST00000589857 CDC23Q9UJX2 597 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 SCAF8Q9UPN6 1271 aaKnown RBP11.77□□□□□ -0.53
ZNF540-208ENST00000589857 RABGAP1Q9Y3P9 1069 aa11.77□□□□□ -0.53
ZNF540-208ENST00000589857 EPN1Q9Y6I3 576 aaPredicted RBP11.77□□□□□ -0.53
ZNF540-208ENST00000589857 TTC26A0AVF1 554 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 MYMKA6NI61 221 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 RAD21O60216 631 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 KRT18P05783 430 aaKnown RBP11.76□□□□□ -0.53
ZNF540-208ENST00000589857 IDEP14735 1019 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms