RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SLC35F1Q5T1Q4 408 aa5.38□□□□□ -1.55
VPS4B-203ENST00000588323 MRM1Q6IN84 353 aaKnown RBP5.38□□□□□ -1.55
VPS4B-203ENST00000588323 ZCCHC14Q8WYQ9 949 aaKnown RBP5.38□□□□□ -1.55
VPS4B-203ENST00000588323 EPN3Q9H201 632 aa5.38□□□□□ -1.55
VPS4B-203ENST00000588323 DEF6Q9H4E7 631 aa5.38□□□□□ -1.55
VPS4B-203ENST00000588323 ASH2LQ9UBL3 628 aa5.38□□□□□ -1.55
VPS4B-203ENST00000588323 ZDHHC9Q9Y397 364 aa5.38□□□□□ -1.55
VPS4B-203ENST00000588323 GPR42O15529 346 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 GDF5P43026 501 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 NFATC3Q12968 1075 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 CDSNQ15517 529 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 SLFN13Q68D06 897 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 CYP4F22Q6NT55 531 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 EEPD1Q7L9B9 569 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 TRIM48Q8IWZ4 208 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 KCTD13Q8WZ19 329 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 C1orf159Q96HA4 380 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 SORCS2Q96PQ0 1159 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 CD248Q9HCU0 757 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 WASF3Q9UPY6 502 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 NPFFR2Q9Y5X5 522 aa5.37□□□□□ -1.55
VPS4B-203ENST00000588323 SUV39H1O43463 412 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 GRIN1Q05586 938 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 MAP4K2Q12851 820 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 VASNQ6EMK4 673 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 ZNF585AQ6P3V2 769 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 PALM2Q8IXS6 379 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 TTLL11Q8NHH1 800 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 PIP4K2CQ8TBX8 421 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 MICAL1Q8TDZ2 1067 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 JAM3Q9BX67 310 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 HSPBP1Q9NZL4 362 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 RBPJLQ9UBG7 517 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 TCAF1Q9Y4C2 921 aa5.36□□□□□ -1.55
VPS4B-203ENST00000588323 UNCXA6NJT0 531 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 SLC27A2O14975 620 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 GJB6O95452 261 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 ETFBP38117 255 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 GRIA2P42262 883 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 SELENOPP49908 381 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 PPP2R2AP63151 447 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 GNL2Q13823 731 aaKnown RBP5.35□□□□□ -1.55
VPS4B-203ENST00000588323 SLC10A6Q3KNW5 377 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 DNERQ8NFT8 737 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 PTPN18Q99952 460 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS4B-203ENST00000588323 KRTAP17-1Q9BYP8 105 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 SCAND2PQ9GZW5 306 aaPredicted RBP5.35□□□□□ -1.55
VPS4B-203ENST00000588323 CDIP1Q9H305 208 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 SLC6A20Q9NP91 592 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 DLL4Q9NR61 685 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 GPR27Q9NS67 375 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 ADAM29Q9UKF5 820 aa5.35□□□□□ -1.55
VPS4B-203ENST00000588323 FBXO21O94952 628 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 ERCC5P28715 1186 aaPredicted RBP5.34□□□□□ -1.55
VPS4B-203ENST00000588323 PHF19Q5T6S3 580 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 CRIP3Q6Q6R5 217 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 USP53Q70EK8 1073 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 USP51Q70EK9 711 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 RALYLQ86SE5 291 aaKnown RBP5.34□□□□□ -1.55
VPS4B-203ENST00000588323 PROSER1Q86XN7 944 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 NUDT10Q8NFP7 164 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 NUDT11Q96G61 164 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 IER2Q9BTL4 223 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 PHF20Q9BVI0 1012 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 VPS11Q9H270 941 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 PODXL2Q9NZ53 605 aa5.34□□□□□ -1.55
VPS4B-203ENST00000588323 R3HCC1Q9Y3T6 440 aaKnown RBP5.34□□□□□ -1.55
VPS4B-203ENST00000588323 PATE3B3GLJ2 98 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 MUSKO15146 869 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 MSCO60682 206 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 CAPNS1P04632 268 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 CHGBP05060 677 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 COL6A1P12109 1028 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 HMGA2P52926 109 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 SMAD2Q15796 467 aaKnown RBP5.33□□□□□ -1.56
VPS4B-203ENST00000588323 Q8N1X5 172 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 DTX3Q8N9I9 347 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 CLEC4DQ8WXI8 215 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 ZNF747Q9BV97 191 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 MEGF9Q9H1U4 602 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 SEMA4AQ9H3S1 761 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 PPARGC1AQ9UBK2 798 aaKnown RBP5.33□□□□□ -1.56
VPS4B-203ENST00000588323 NUB1Q9Y5A7 615 aa5.33□□□□□ -1.56
VPS4B-203ENST00000588323 A0A1W2PQU0 124 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 CYR61O00622 381 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 DLX3O60479 287 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 FZD7O75084 574 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 ZNF623O75123 536 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 KLHL18O94889 574 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 AMHP03971 560 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 SPIRE1Q08AE8 756 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 TUSC3Q13454 348 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 HSP90AA2PQ14568 343 aaPredicted RBP5.32□□□□□ -1.56
VPS4B-203ENST00000588323 PAN2Q504Q3 1202 aaKnown RBP5.32□□□□□ -1.56
VPS4B-203ENST00000588323 RSPO2Q6UXX9 243 aaPredicted RBP5.32□□□□□ -1.56
VPS4B-203ENST00000588323 Q6ZUG5 572 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 OTOP3Q7RTS5 596 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 ZFPM1Q8IX07 1006 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 RBM12BQ8IXT5 1001 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms