RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 TMOD4Q9NZQ9 345 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 CNOT7Q9UIV1 285 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 NDUFA10O95299 355 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 KRT13P13646 458 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 PRPF4BQ13523 1007 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 PNMA5Q96PV4 448 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 ALS2CR12Q96Q35 445 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 C7orf25Q9BPX7 421 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 PCIF1Q9H4Z3 704 aa13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 LIMA1Q9UHB6 759 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-208ENST00000585799 MED24O75448 989 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 ERLIN1O75477 346 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 GMPSP49915 693 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 KLHL30Q0D2K2 578 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 IDI2Q9BXS1 227 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 MYOZ2Q9NPC6 264 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 CLEC11AQ9Y240 323 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 COL4A3BPQ9Y5P4 624 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 LAMA4Q16363 1823 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 RASSF7Q02833 373 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 MTMR2Q13614 643 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 PDIA5Q14554 519 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 VWA3BQ502W6 1294 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 UTP14CQ5TAP6 766 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 KSR1Q8IVT5 923 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 EHD4Q9H223 541 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 VCPKMTQ9H867 229 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 MYH7P12883 1935 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 A0A0U1RQJ8 604 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 ERICH4A6NGS2 130 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 TUBB4AP04350 444 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 PAFAH1B1P43034 410 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 USP11P51784 963 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 PSMC6P62333 389 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 XKR9Q5GH70 373 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 VPS36Q86VN1 386 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 ELOA2Q8IYF1 753 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 ATRIPQ8WXE1 791 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 EIF2AK1Q9BQI3 630 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 NWD2Q9ULI1 1742 aa13.74□□□□□ -0.21
SMARCA4-208ENST00000585799 CALUO43852 315 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 XRCC5P13010 732 aaKnown RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 INPP5BP32019 993 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 EEPD1Q7L9B9 569 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 CCDC94Q9BW85 323 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 ARFGAP3Q9NP61 516 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 FRMD4BQ9Y2L6 1034 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 NID2Q14112 1375 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 DUOX1Q9NRD9 1551 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 PVALEFA0A1B0GWK0 134 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 RSPH10B2B2RC85 870 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 SEC31AO94979 1220 aaKnown RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 RSPH10BP0C881 870 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 EIF4A3P38919 411 aaKnown RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 MRPS25P82663 173 aaKnown RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 FAM102BQ5T8I3 360 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 SFMBT2Q5VUG0 894 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 CDKAL1Q5VV42 579 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 BLOC1S4Q9NUP1 217 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 ROBO3Q96MS0 1386 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 K7ENM7 598 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 FXR2P51116 673 aaKnown RBP eCLIP13.73□□□□□ -0.211e-6■■■■□ 20
SMARCA4-208ENST00000585799 SLC9C1Q4G0N8 1177 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 NYAP1Q6ZVC0 841 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 CATSPER3Q86XQ3 398 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 NHEJ1Q9H9Q4 299 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 BTAF1O14981 1849 aa13.73□□□□□ -0.21
SMARCA4-208ENST00000585799 WNT10BO00744 389 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 PHACTR2O75167 634 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 NMT1P30419 496 aaKnown RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 HMGCS2P54868 508 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 ASIC2Q16515 512 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 TTI2Q6NXR4 508 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 NLRX1Q86UT6 975 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 GUF1Q8N442 669 aaKnown RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 CEP112Q8N8E3 955 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 KIAA0895Q8NCT3 520 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 SECISBP2LQ93073 1101 aaKnown RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 ZKSCAN4Q969J2 545 aaPredicted RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 MMTAG2Q9BU76 263 aaKnown RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 SNED1Q8TER0 1413 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 KLRG2A4D1S0 409 aaPredicted RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 JAG1P78504 1218 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 DCAF15Q66K64 600 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 FAM160B2Q86V87 743 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 REXO1L1PQ8IX06 675 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 CCDC127Q96BQ5 260 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 SEMA6BQ9H3T3 888 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 IRS2Q9Y4H2 1338 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 ANKRD36CQ5JPF3 1778 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 FAM86B1E9PN63 330 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 IPO5O00410 1097 aaKnown RBP13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 MSH4O15457 936 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 FAM86B2P0C5J1 330 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 CXCR5P32302 372 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 ZBED6P86452 979 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 PPP4R3AQ6IN85 833 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 EHBP1Q8NDI1 1231 aa13.72□□□□□ -0.21
SMARCA4-208ENST00000585799 ZBTB39O15060 712 aa13.71□□□□□ -0.21
SMARCA4-208ENST00000585799 SRGAP2O75044 1071 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms