RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 RBL2Q08999 1139 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 NEDD9Q14511 834 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 GPNMBQ14956 572 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 DEFB123Q8N688 67 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 HERVK_113Q902F9 699 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 WNT8BQ93098 351 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 PHKBQ93100 1093 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 MLXIPQ9HAP2 919 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 TMEM260Q9NX78 707 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 CXXC1Q9P0U4 656 aaPredicted RBP17.39■□□□□ 0.37
CLIP3-202ENST00000585466 CYP46A1Q9Y6A2 500 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 SPDYE3A6NKU9 549 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 PPFIA3O75145 1194 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 CCT2P78371 535 aaKnown RBP17.38■□□□□ 0.37
CLIP3-202ENST00000585466 ZNF200P98182 395 aaPredicted RBP17.38■□□□□ 0.37
CLIP3-202ENST00000585466 PTGISQ16647 500 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 TRIM71Q2Q1W2 868 aaKnown RBP17.38■□□□□ 0.37
CLIP3-202ENST00000585466 PSRC1Q6PGN9 363 aaPredicted RBP17.38■□□□□ 0.37
CLIP3-202ENST00000585466 TRAF7Q6Q0C0 670 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 CYP2W1Q8TAV3 490 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 LARP6Q9BRS8 491 aaKnown RBP17.38■□□□□ 0.37
CLIP3-202ENST00000585466 ALG1Q9BT22 464 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 KATNAL1Q9BW62 490 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 ANO3Q9BYT9 981 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 ZMYND12Q9H0C1 365 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 JADE2Q9NQC1 790 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 PTPRSQ13332 1948 aa17.38■□□□□ 0.37
CLIP3-202ENST00000585466 IQCF3P0C7M6 154 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 SREBF1P36956 1147 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 CHMP4BP1P59074 171 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 NLRX1Q86UT6 975 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 TRIM50Q86XT4 487 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 GUCD1Q96NT3 240 aa17.37■□□□□ 0.37
CLIP3-202ENST00000585466 RNF26Q9BY78 433 aaPredicted RBP17.37■□□□□ 0.37
CLIP3-202ENST00000585466 TTYH1Q9H313 450 aaPredicted RBP17.37■□□□□ 0.37
CLIP3-202ENST00000585466 EDIL3O43854 480 aa17.36■□□□□ 0.37
CLIP3-202ENST00000585466 SEC24BO95487 1268 aa17.36■□□□□ 0.37
CLIP3-202ENST00000585466 FOSP01100 380 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-202ENST00000585466 AP3B2Q13367 1082 aa17.36■□□□□ 0.37
CLIP3-202ENST00000585466 ZNF274Q96GC6 653 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-202ENST00000585466 MXRA8Q9BRK3 442 aa17.36■□□□□ 0.37
CLIP3-202ENST00000585466 CHD9Q3L8U1 2897 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 GSTTP1A0A1W2PQM5 241 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 GRXCR1A8MXD5 290 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 H3BRB1 525 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 ANAPC15P60006 121 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 MTMR1Q13613 665 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 C7orf31Q8N865 590 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 CAGE1Q8TC20 777 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 CDHR1Q96JP9 859 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 GLT8D2Q9H1C3 349 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 TUT1Q9H6E5 874 aaKnown RBP17.35■□□□□ 0.37
CLIP3-202ENST00000585466 KCNH7Q9NS40 1196 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 PDRG1Q9NUG6 133 aa17.35■□□□□ 0.37
CLIP3-202ENST00000585466 IGLV3-22A0A075B6J6 115 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.34■□□□□ 0.37
CLIP3-202ENST00000585466 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.34■□□□□ 0.37
CLIP3-202ENST00000585466 MEIS1O00470 390 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 MAFGO15525 162 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 FGBP02675 491 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 SMIM10L2AP0DMW4 78 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 SMIM10L2BP0DMW5 78 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 ARP10275 920 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 ADAM17P78536 824 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 ITGB3BPQ13352 177 aaPredicted RBP17.34■□□□□ 0.37
CLIP3-202ENST00000585466 BFSP2Q13515 415 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 CEP55Q53EZ4 464 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 JAKMIP3Q5VZ66 844 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 OTOP2Q7RTS6 562 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 SERINC5Q86VE9 423 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 GIMAP8Q8ND71 665 aaPredicted RBP17.34■□□□□ 0.37
CLIP3-202ENST00000585466 AFAP1L1Q8TED9 768 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 PCYT2Q99447 389 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 SLC26A6Q9BXS9 759 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 PKD2L1Q9P0L9 805 aa17.34■□□□□ 0.37
CLIP3-202ENST00000585466 SIP14410 1827 aa17.33■□□□□ 0.37
CLIP3-202ENST00000585466 FAM86B1E9PN63 330 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 NOP56O00567 594 aaKnown RBP17.33■□□□□ 0.36
CLIP3-202ENST00000585466 PFKMP08237 780 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 CYP3A4P08684 503 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 FAM86B2P0C5J1 330 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 CKBP12277 381 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 RFC2P35250 354 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 PBX2P40425 430 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 ARHGAP4P98171 946 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 SP4Q02446 784 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 PTK7Q13308 1070 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 MBTPS1Q14703 1052 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 NPY5RQ15761 445 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 TCTN1Q2MV58 587 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 DEFB128Q7Z7B8 93 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 RASGRP4Q8TDF6 673 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 SEMA6BQ9H3T3 888 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 RNPEPQ9H4A4 650 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 EHMT1Q9H9B1 1298 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 AGO4Q9HCK5 861 aaKnown RBP17.33■□□□□ 0.36
CLIP3-202ENST00000585466 VPS54Q9P1Q0 977 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 TPCN1Q9ULQ1 816 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 KAT6AQ92794 2004 aa17.33■□□□□ 0.36
CLIP3-202ENST00000585466 NFASCO94856 1347 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms